Protein–RNA interactions for Protein: Q5U4C3

Scaf1, Splicing factor, arginine/serine-rich 19, mousemouse

Known RBP Predictions only

Length 1,256 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf1Q5U4C3 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scaf1Q5U4C3 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Scaf1Q5U4C3 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scaf1Q5U4C3 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scaf1Q5U4C3 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Scaf1Q5U4C3 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC20.32■□□□□ 0.84
Scaf1Q5U4C3 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Scaf1Q5U4C3 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scaf1Q5U4C3 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scaf1Q5U4C3 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Gm43125-201ENSMUST00000201724 730 ntBASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf1Q5U4C3 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Gm12017-201ENSMUST00000122453 1003 ntBASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scaf1Q5U4C3 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Scaf1Q5U4C3 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scaf1Q5U4C3 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Scaf1Q5U4C3 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC20.29■□□□□ 0.84
Scaf1Q5U4C3 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Scaf1Q5U4C3 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC20.29■□□□□ 0.84
Scaf1Q5U4C3 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Scaf1Q5U4C3 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC20.29■□□□□ 0.84
Scaf1Q5U4C3 AC124732.2-201ENSMUST00000221977 316 ntBASIC20.29■□□□□ 0.84
Scaf1Q5U4C3 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC20.29■□□□□ 0.84
Scaf1Q5U4C3 CT009510.1-201ENSMUST00000227972 270 ntBASIC20.29■□□□□ 0.84
Scaf1Q5U4C3 AC158982.1-201ENSMUST00000228377 901 ntBASIC20.29■□□□□ 0.84
Scaf1Q5U4C3 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Scaf1Q5U4C3 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scaf1Q5U4C3 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scaf1Q5U4C3 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Scaf1Q5U4C3 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scaf1Q5U4C3 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Mir449b-201ENSMUST00000104833 80 ntBASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Gm15693-201ENSMUST00000120470 637 ntBASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 CT010506.4-201ENSMUST00000225457 351 ntBASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scaf1Q5U4C3 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scaf1Q5U4C3 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scaf1Q5U4C3 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scaf1Q5U4C3 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC20.27■□□□□ 0.84
Scaf1Q5U4C3 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC20.27■□□□□ 0.84
Scaf1Q5U4C3 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms