Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 AC124751.1-201ENSMUST00000222716 1408 ntBASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 Gm7653-201ENSMUST00000214567 508 ntBASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 Gm7488-201ENSMUST00000117148 684 ntBASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 Gm11543-201ENSMUST00000120758 370 ntBASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Ddb1Q3U1J4 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
Ddb1Q3U1J4 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
Ddb1Q3U1J4 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Ddb1Q3U1J4 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddb1Q3U1J4 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Ddb1Q3U1J4 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddb1Q3U1J4 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddb1Q3U1J4 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddb1Q3U1J4 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddb1Q3U1J4 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC19.76■□□□□ 0.75
Ddb1Q3U1J4 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Ddb1Q3U1J4 Gm38225-201ENSMUST00000194001 393 ntBASIC19.76■□□□□ 0.75
Ddb1Q3U1J4 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddb1Q3U1J4 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddb1Q3U1J4 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddb1Q3U1J4 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 AC135669.1-201ENSMUST00000213585 412 ntBASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Gm43182-201ENSMUST00000199476 2528 ntBASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC19.75■□□□□ 0.75
Ddb1Q3U1J4 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddb1Q3U1J4 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddb1Q3U1J4 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
Ddb1Q3U1J4 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC19.74■□□□□ 0.75
Ddb1Q3U1J4 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Ddb1Q3U1J4 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC19.74■□□□□ 0.75
Ddb1Q3U1J4 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddb1Q3U1J4 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC19.74■□□□□ 0.75
Ddb1Q3U1J4 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Ddb1Q3U1J4 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC19.74■□□□□ 0.75
Ddb1Q3U1J4 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddb1Q3U1J4 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddb1Q3U1J4 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddb1Q3U1J4 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC19.74■□□□□ 0.75
Ddb1Q3U1J4 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddb1Q3U1J4 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC19.73■□□□□ 0.75
Ddb1Q3U1J4 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ddb1Q3U1J4 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ddb1Q3U1J4 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms