Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Ptchd3Q0EEE2 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Gm18421-201ENSMUST00000204122 625 ntBASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Gm21559-201ENSMUST00000220638 855 ntBASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Gm8587-201ENSMUST00000076538 843 ntBASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ptchd3Q0EEE2 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.02
Ptchd3Q0EEE2 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Gm10231-201ENSMUST00000181584 441 ntBASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Gm10175-202ENSMUST00000208752 441 ntBASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ptchd3Q0EEE2 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Tfap2a-203ENSMUST00000223869 2037 ntBASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC15.13■□□□□ 0.01
Ptchd3Q0EEE2 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ptchd3Q0EEE2 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms