Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC13.49□□□□□ -0.25
Nkx3-1P97436 AC151836.1-202ENSMUST00000226259 753 ntBASIC13.49□□□□□ -0.25
Nkx3-1P97436 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Nkx3-1P97436 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Gm9682-201ENSMUST00000197505 556 ntBASIC13.48□□□□□ -0.25
Nkx3-1P97436 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Nkx3-1P97436 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Nkx3-1P97436 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Nkx3-1P97436 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Gm18489-201ENSMUST00000172565 551 ntBASIC13.47□□□□□ -0.25
Nkx3-1P97436 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC13.47□□□□□ -0.25
Nkx3-1P97436 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Chchd1-203ENSMUST00000224633 557 ntBASIC13.47□□□□□ -0.25
Nkx3-1P97436 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Nkx3-1P97436 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Wnt10b-206ENSMUST00000228546 2709 ntBASIC13.47□□□□□ -0.25
Nkx3-1P97436 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Nkx3-1P97436 Best4-ps-201ENSMUST00000129783 1380 ntBASIC13.46□□□□□ -0.25
Nkx3-1P97436 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Nkx3-1P97436 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Nkx3-1P97436 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC13.46□□□□□ -0.25
Nkx3-1P97436 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Nkx3-1P97436 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Nkx3-1P97436 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Nkx3-1P97436 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Nkx3-1P97436 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Nkx3-1P97436 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms