Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
Col1a1P11087 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col1a1P11087 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col1a1P11087 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Col1a1P11087 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col1a1P11087 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col1a1P11087 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col1a1P11087 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col1a1P11087 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col1a1P11087 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
Col1a1P11087 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col1a1P11087 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC18.15■□□□□ 0.5
Col1a1P11087 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col1a1P11087 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Col1a1P11087 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col1a1P11087 Gm25144-201ENSMUST00000179561 110 ntBASIC18.15■□□□□ 0.5
Col1a1P11087 Gm25352-201ENSMUST00000179815 110 ntBASIC18.15■□□□□ 0.5
Col1a1P11087 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col1a1P11087 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Col1a1P11087 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col1a1P11087 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col1a1P11087 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col1a1P11087 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col1a1P11087 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col1a1P11087 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col1a1P11087 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col1a1P11087 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col1a1P11087 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col1a1P11087 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col1a1P11087 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Col1a1P11087 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col1a1P11087 Gm7292-201ENSMUST00000194706 2527 ntBASIC18.15■□□□□ 0.5
Col1a1P11087 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col1a1P11087 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col1a1P11087 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Col1a1P11087 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col1a1P11087 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Col1a1P11087 Gm13337-201ENSMUST00000119183 1594 ntBASIC18.14■□□□□ 0.5
Col1a1P11087 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Col1a1P11087 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Col1a1P11087 Gm11543-201ENSMUST00000120758 370 ntBASIC18.14■□□□□ 0.5
Col1a1P11087 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Col1a1P11087 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Col1a1P11087 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC18.14■□□□□ 0.5
Col1a1P11087 Gm2423-201ENSMUST00000074863 733 ntBASIC18.14■□□□□ 0.5
Col1a1P11087 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC18.14■□□□□ 0.5
Col1a1P11087 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col1a1P11087 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col1a1P11087 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Col1a1P11087 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col1a1P11087 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Col1a1P11087 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col1a1P11087 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Col1a1P11087 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col1a1P11087 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col1a1P11087 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col1a1P11087 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col1a1P11087 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Col1a1P11087 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col1a1P11087 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Col1a1P11087 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC18.14■□□□□ 0.49
Col1a1P11087 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC18.14■□□□□ 0.49
Col1a1P11087 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Col1a1P11087 Gm38294-201ENSMUST00000192831 381 ntBASIC18.14■□□□□ 0.49
Col1a1P11087 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Col1a1P11087 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col1a1P11087 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col1a1P11087 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Col1a1P11087 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col1a1P11087 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col1a1P11087 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col1a1P11087 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col1a1P11087 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col1a1P11087 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col1a1P11087 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col1a1P11087 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
Col1a1P11087 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col1a1P11087 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC18.13■□□□□ 0.49
Col1a1P11087 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col1a1P11087 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col1a1P11087 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
Col1a1P11087 Gm13517-201ENSMUST00000120782 1495 ntBASIC18.13■□□□□ 0.49
Col1a1P11087 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col1a1P11087 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC18.13■□□□□ 0.49
Col1a1P11087 Gm13823-201ENSMUST00000119930 345 ntBASIC18.13■□□□□ 0.49
Col1a1P11087 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC18.13■□□□□ 0.49
Col1a1P11087 Gm17837-201ENSMUST00000186435 985 ntBASIC18.13■□□□□ 0.49
Col1a1P11087 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC18.13■□□□□ 0.49
Col1a1P11087 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC18.13■□□□□ 0.49
Col1a1P11087 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC18.13■□□□□ 0.49
Col1a1P11087 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col1a1P11087 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col1a1P11087 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
Col1a1P11087 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col1a1P11087 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col1a1P11087 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col1a1P11087 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC18.12■□□□□ 0.49
Col1a1P11087 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col1a1P11087 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col1a1P11087 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms