Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 AC127349.1-201ENSMUST00000224590 266 ntBASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Prpf40aQ9R1C7 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Gm15165-201ENSMUST00000118140 502 ntBASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Prpf40aQ9R1C7 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Prpf40aQ9R1C7 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Prpf40aQ9R1C7 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Prpf40aQ9R1C7 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC17.23■□□□□ 0.35
Prpf40aQ9R1C7 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Prpf40aQ9R1C7 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC17.23■□□□□ 0.35
Prpf40aQ9R1C7 Gm28033-201ENSMUST00000184224 96 ntBASIC17.23■□□□□ 0.35
Prpf40aQ9R1C7 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Prpf40aQ9R1C7 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Prpf40aQ9R1C7 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Prpf40aQ9R1C7 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Prpf40aQ9R1C7 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Prpf40aQ9R1C7 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Prpf40aQ9R1C7 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Prpf40aQ9R1C7 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prpf40aQ9R1C7 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prpf40aQ9R1C7 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prpf40aQ9R1C7 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prpf40aQ9R1C7 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prpf40aQ9R1C7 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prpf40aQ9R1C7 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC17.22■□□□□ 0.35
Prpf40aQ9R1C7 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Prpf40aQ9R1C7 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC17.22■□□□□ 0.35
Prpf40aQ9R1C7 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Prpf40aQ9R1C7 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC17.22■□□□□ 0.35
Prpf40aQ9R1C7 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC17.22■□□□□ 0.35
Prpf40aQ9R1C7 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC17.22■□□□□ 0.35
Prpf40aQ9R1C7 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC17.22■□□□□ 0.35
Prpf40aQ9R1C7 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Prpf40aQ9R1C7 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prpf40aQ9R1C7 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prpf40aQ9R1C7 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prpf40aQ9R1C7 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Prpf40aQ9R1C7 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prpf40aQ9R1C7 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC17.21■□□□□ 0.35
Prpf40aQ9R1C7 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prpf40aQ9R1C7 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Prpf40aQ9R1C7 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Prpf40aQ9R1C7 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prpf40aQ9R1C7 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prpf40aQ9R1C7 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prpf40aQ9R1C7 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prpf40aQ9R1C7 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prpf40aQ9R1C7 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Prpf40aQ9R1C7 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Prpf40aQ9R1C7 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms