Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim54Q9ERP3 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC16.93■□□□□ 0.3
Trim54Q9ERP3 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Trim54Q9ERP3 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Trim54Q9ERP3 Gm7229-201ENSMUST00000214719 1007 ntBASIC16.93■□□□□ 0.3
Trim54Q9ERP3 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC16.93■□□□□ 0.3
Trim54Q9ERP3 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim54Q9ERP3 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Trim54Q9ERP3 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Trim54Q9ERP3 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim54Q9ERP3 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim54Q9ERP3 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim54Q9ERP3 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim54Q9ERP3 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim54Q9ERP3 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim54Q9ERP3 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim54Q9ERP3 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim54Q9ERP3 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim54Q9ERP3 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC16.93■□□□□ 0.3
Trim54Q9ERP3 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC16.93■□□□□ 0.3
Trim54Q9ERP3 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
Trim54Q9ERP3 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim54Q9ERP3 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim54Q9ERP3 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim54Q9ERP3 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim54Q9ERP3 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim54Q9ERP3 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim54Q9ERP3 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim54Q9ERP3 AC115863.1-201ENSMUST00000214815 1813 ntBASIC16.92■□□□□ 0.3
Trim54Q9ERP3 Zkscan3-208ENSMUST00000224820 5398 ntBASIC16.92■□□□□ 0.3
Trim54Q9ERP3 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trim54Q9ERP3 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC16.92■□□□□ 0.3
Trim54Q9ERP3 H2af-ps-201ENSMUST00000119066 295 ntBASIC16.92■□□□□ 0.3
Trim54Q9ERP3 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim54Q9ERP3 Mir8117-201ENSMUST00000184773 107 ntBASIC16.92■□□□□ 0.3
Trim54Q9ERP3 Gm19164-201ENSMUST00000210667 640 ntBASIC16.92■□□□□ 0.3
Trim54Q9ERP3 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trim54Q9ERP3 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim54Q9ERP3 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trim54Q9ERP3 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC16.92■□□□□ 0.3
Trim54Q9ERP3 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trim54Q9ERP3 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim54Q9ERP3 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim54Q9ERP3 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Trim54Q9ERP3 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Gm5648-201ENSMUST00000122244 1587 ntBASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Gm5253-201ENSMUST00000187104 1025 ntBASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Ndufaf2-202ENSMUST00000223734 556 ntBASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim54Q9ERP3 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Gm4913-201ENSMUST00000117075 1290 ntBASIC16.9■□□□□ 0.3
Trim54Q9ERP3 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Gm44945-201ENSMUST00000206764 1187 ntBASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms