Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Gm23689-201ENSMUST00000180354 110 ntBASIC17.68■□□□□ 0.42
Syne4Q8CII8 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Syne4Q8CII8 Gm27359-201ENSMUST00000184153 110 ntBASIC17.68■□□□□ 0.42
Syne4Q8CII8 Gm27785-201ENSMUST00000184268 110 ntBASIC17.68■□□□□ 0.42
Syne4Q8CII8 Gm27466-201ENSMUST00000184396 110 ntBASIC17.68■□□□□ 0.42
Syne4Q8CII8 Gm27703-201ENSMUST00000184836 110 ntBASIC17.68■□□□□ 0.42
Syne4Q8CII8 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Syne4Q8CII8 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC17.68■□□□□ 0.42
Syne4Q8CII8 AC126408.1-201ENSMUST00000225184 523 ntBASIC17.68■□□□□ 0.42
Syne4Q8CII8 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
Syne4Q8CII8 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Syne4Q8CII8 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Syne4Q8CII8 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Syne4Q8CII8 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Syne4Q8CII8 Gm8839-201ENSMUST00000121279 1645 ntBASIC17.68■□□□□ 0.42
Syne4Q8CII8 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Syne4Q8CII8 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Syne4Q8CII8 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Syne4Q8CII8 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Syne4Q8CII8 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Syne4Q8CII8 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Syne4Q8CII8 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Syne4Q8CII8 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Syne4Q8CII8 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Syne4Q8CII8 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Syne4Q8CII8 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Syne4Q8CII8 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Syne4Q8CII8 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Syne4Q8CII8 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC17.67■□□□□ 0.42
Syne4Q8CII8 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Syne4Q8CII8 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC17.67■□□□□ 0.42
Syne4Q8CII8 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Syne4Q8CII8 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Syne4Q8CII8 AC154767.3-201ENSMUST00000225150 1342 ntBASIC17.67■□□□□ 0.42
Syne4Q8CII8 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Syne4Q8CII8 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Syne4Q8CII8 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Syne4Q8CII8 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Gm12428-201ENSMUST00000119844 727 ntBASIC17.66■□□□□ 0.42
Syne4Q8CII8 Gm12017-201ENSMUST00000122453 1003 ntBASIC17.66■□□□□ 0.42
Syne4Q8CII8 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Mir6977-201ENSMUST00000184960 64 ntBASIC17.66■□□□□ 0.42
Syne4Q8CII8 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Arhgef33-209ENSMUST00000225223 714 ntBASIC17.66■□□□□ 0.42
Syne4Q8CII8 CT025555.1-201ENSMUST00000225901 1217 ntBASIC17.66■□□□□ 0.42
Syne4Q8CII8 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Syne4Q8CII8 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Syne4Q8CII8 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Rarb-207ENSMUST00000225921 2756 ntBASIC17.65■□□□□ 0.42
Syne4Q8CII8 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Syne4Q8CII8 AC157650.3-201ENSMUST00000225058 1476 ntBASIC17.65■□□□□ 0.42
Syne4Q8CII8 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Syne4Q8CII8 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC17.65■□□□□ 0.42
Syne4Q8CII8 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
Syne4Q8CII8 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
Syne4Q8CII8 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms