Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vps53Q8CCB4 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC18.22■□□□□ 0.51
Vps53Q8CCB4 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Vps53Q8CCB4 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC18.22■□□□□ 0.51
Vps53Q8CCB4 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vps53Q8CCB4 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Vps53Q8CCB4 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vps53Q8CCB4 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps53Q8CCB4 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps53Q8CCB4 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps53Q8CCB4 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps53Q8CCB4 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps53Q8CCB4 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC18.21■□□□□ 0.51
Vps53Q8CCB4 Mir5131-201ENSMUST00000175426 93 ntBASIC18.21■□□□□ 0.51
Vps53Q8CCB4 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC18.21■□□□□ 0.51
Vps53Q8CCB4 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Vps53Q8CCB4 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps53Q8CCB4 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps53Q8CCB4 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps53Q8CCB4 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps53Q8CCB4 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps53Q8CCB4 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps53Q8CCB4 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps53Q8CCB4 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Vps53Q8CCB4 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Vps53Q8CCB4 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps53Q8CCB4 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC18.2■□□□□ 0.5
Vps53Q8CCB4 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC18.2■□□□□ 0.5
Vps53Q8CCB4 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Vps53Q8CCB4 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps53Q8CCB4 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC18.2■□□□□ 0.5
Vps53Q8CCB4 Gm18856-201ENSMUST00000178096 1374 ntBASIC18.2■□□□□ 0.5
Vps53Q8CCB4 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps53Q8CCB4 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps53Q8CCB4 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps53Q8CCB4 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Vps53Q8CCB4 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Vps53Q8CCB4 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Vps53Q8CCB4 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC18.2■□□□□ 0.5
Vps53Q8CCB4 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
Vps53Q8CCB4 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC18.2■□□□□ 0.5
Vps53Q8CCB4 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps53Q8CCB4 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
Vps53Q8CCB4 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps53Q8CCB4 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps53Q8CCB4 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps53Q8CCB4 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC18.2■□□□□ 0.5
Vps53Q8CCB4 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Rbfox2-206ENSMUST00000227314 1810 ntBASIC18.19■□□□□ 0.5
Vps53Q8CCB4 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Ntrk2-205ENSMUST00000224402 2284 ntBASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Gm44430-201ENSMUST00000203376 995 ntBASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Gm10060-201ENSMUST00000212002 111 ntBASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps53Q8CCB4 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC18.18■□□□□ 0.5
Vps53Q8CCB4 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Vps53Q8CCB4 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms