Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Trim28Q62318 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim28Q62318 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC20.26■□□□□ 0.83
Trim28Q62318 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim28Q62318 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Trim28Q62318 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim28Q62318 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim28Q62318 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC20.26■□□□□ 0.83
Trim28Q62318 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim28Q62318 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim28Q62318 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim28Q62318 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim28Q62318 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC20.25■□□□□ 0.83
Trim28Q62318 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
Trim28Q62318 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim28Q62318 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim28Q62318 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trim28Q62318 Gm16198-201ENSMUST00000118766 670 ntBASIC20.25■□□□□ 0.83
Trim28Q62318 Gm17271-201ENSMUST00000165535 355 ntBASIC20.25■□□□□ 0.83
Trim28Q62318 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Trim28Q62318 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Trim28Q62318 Gm7556-201ENSMUST00000201178 1084 ntBASIC20.25■□□□□ 0.83
Trim28Q62318 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim28Q62318 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim28Q62318 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim28Q62318 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim28Q62318 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC20.25■□□□□ 0.83
Trim28Q62318 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim28Q62318 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim28Q62318 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim28Q62318 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim28Q62318 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim28Q62318 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim28Q62318 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC20.24■□□□□ 0.83
Trim28Q62318 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim28Q62318 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC20.24■□□□□ 0.83
Trim28Q62318 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trim28Q62318 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Trim28Q62318 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC20.24■□□□□ 0.83
Trim28Q62318 AC124549.3-201ENSMUST00000225541 367 ntBASIC20.24■□□□□ 0.83
Trim28Q62318 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim28Q62318 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim28Q62318 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Trim28Q62318 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Trim28Q62318 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim28Q62318 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim28Q62318 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim28Q62318 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim28Q62318 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim28Q62318 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Trim28Q62318 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim28Q62318 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim28Q62318 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Trim28Q62318 Gm9385-201ENSMUST00000117563 472 ntBASIC20.23■□□□□ 0.83
Trim28Q62318 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Trim28Q62318 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC20.23■□□□□ 0.83
Trim28Q62318 Gm2272-201ENSMUST00000194903 582 ntBASIC20.23■□□□□ 0.83
Trim28Q62318 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC20.23■□□□□ 0.83
Trim28Q62318 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC20.23■□□□□ 0.83
Trim28Q62318 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim28Q62318 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim28Q62318 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Trim28Q62318 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Trim28Q62318 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim28Q62318 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim28Q62318 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim28Q62318 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim28Q62318 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim28Q62318 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim28Q62318 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Trim28Q62318 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim28Q62318 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Trim28Q62318 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim28Q62318 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC20.22■□□□□ 0.83
Trim28Q62318 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim28Q62318 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim28Q62318 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Trim28Q62318 Gm6226-201ENSMUST00000117765 1146 ntBASIC20.22■□□□□ 0.83
Trim28Q62318 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim28Q62318 Rpph1-201ENSMUST00000175096 319 ntBASIC20.22■□□□□ 0.83
Trim28Q62318 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim28Q62318 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim28Q62318 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Trim28Q62318 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trim28Q62318 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim28Q62318 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim28Q62318 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Trim28Q62318 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
Trim28Q62318 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim28Q62318 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim28Q62318 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim28Q62318 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Trim28Q62318 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim28Q62318 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim28Q62318 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Trim28Q62318 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC20.21■□□□□ 0.83
Trim28Q62318 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim28Q62318 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Trim28Q62318 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC20.21■□□□□ 0.83
Trim28Q62318 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC20.21■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms