Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim27Q62158 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim27Q62158 BC037039-201ENSMUST00000192003 2205 ntBASIC19.24■□□□□ 0.67
Trim27Q62158 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim27Q62158 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim27Q62158 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim27Q62158 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim27Q62158 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim27Q62158 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim27Q62158 Gm13830-205ENSMUST00000201195 1155 ntBASIC19.24■□□□□ 0.67
Trim27Q62158 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC19.24■□□□□ 0.67
Trim27Q62158 AC159093.1-201ENSMUST00000227779 380 ntBASIC19.24■□□□□ 0.67
Trim27Q62158 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim27Q62158 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
Trim27Q62158 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim27Q62158 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim27Q62158 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim27Q62158 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim27Q62158 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim27Q62158 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim27Q62158 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim27Q62158 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC19.23■□□□□ 0.67
Trim27Q62158 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim27Q62158 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim27Q62158 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trim27Q62158 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim27Q62158 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC19.23■□□□□ 0.67
Trim27Q62158 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim27Q62158 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim27Q62158 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim27Q62158 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim27Q62158 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim27Q62158 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC19.23■□□□□ 0.67
Trim27Q62158 Gm8344-201ENSMUST00000119813 856 ntBASIC19.23■□□□□ 0.67
Trim27Q62158 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC19.23■□□□□ 0.67
Trim27Q62158 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Trim27Q62158 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim27Q62158 Birc2-201ENSMUST00000054878 378 ntBASIC19.23■□□□□ 0.67
Trim27Q62158 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim27Q62158 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim27Q62158 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim27Q62158 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trim27Q62158 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Trim27Q62158 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim27Q62158 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Trim27Q62158 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC19.22■□□□□ 0.67
Trim27Q62158 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Trim27Q62158 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
Trim27Q62158 Gm11780-201ENSMUST00000136880 516 ntBASIC19.22■□□□□ 0.67
Trim27Q62158 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC19.22■□□□□ 0.67
Trim27Q62158 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 AC158538.2-201ENSMUST00000225455 906 ntBASIC19.22■□□□□ 0.67
Trim27Q62158 Rbfox2-207ENSMUST00000227533 1041 ntBASIC19.22■□□□□ 0.67
Trim27Q62158 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Trim27Q62158 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim27Q62158 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim27Q62158 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim27Q62158 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Trim27Q62158 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Trim27Q62158 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim27Q62158 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim27Q62158 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim27Q62158 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim27Q62158 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC19.21■□□□□ 0.67
Trim27Q62158 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC19.21■□□□□ 0.67
Trim27Q62158 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC19.21■□□□□ 0.67
Trim27Q62158 Gm27459-201ENSMUST00000184860 107 ntBASIC19.21■□□□□ 0.67
Trim27Q62158 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim27Q62158 Gm37584-201ENSMUST00000193595 1290 ntBASIC19.21■□□□□ 0.67
Trim27Q62158 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC19.21■□□□□ 0.67
Trim27Q62158 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim27Q62158 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC19.21■□□□□ 0.67
Trim27Q62158 AC159301.1-201ENSMUST00000225130 1182 ntBASIC19.21■□□□□ 0.67
Trim27Q62158 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim27Q62158 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim27Q62158 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim27Q62158 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim27Q62158 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
Trim27Q62158 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim27Q62158 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms