Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Col17a1Q07563 Gm5953-201ENSMUST00000220644 2616 ntBASIC23.89■■□□□ 1.41
Col17a1Q07563 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC23.89■■□□□ 1.41
Col17a1Q07563 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Col17a1Q07563 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Col17a1Q07563 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Col17a1Q07563 Gm5940-201ENSMUST00000117582 1068 ntBASIC23.88■■□□□ 1.41
Col17a1Q07563 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
Col17a1Q07563 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC23.88■■□□□ 1.41
Col17a1Q07563 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC23.88■■□□□ 1.41
Col17a1Q07563 Gm19220-201ENSMUST00000222682 803 ntBASIC23.88■■□□□ 1.41
Col17a1Q07563 Gm7399-201ENSMUST00000032395 858 ntBASIC23.88■■□□□ 1.41
Col17a1Q07563 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Col17a1Q07563 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Col17a1Q07563 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC23.88■■□□□ 1.41
Col17a1Q07563 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
Col17a1Q07563 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Col17a1Q07563 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Col17a1Q07563 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
Col17a1Q07563 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Col17a1Q07563 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Col17a1Q07563 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Col17a1Q07563 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC23.87■■□□□ 1.41
Col17a1Q07563 AC150560.1-201ENSMUST00000227731 1187 ntBASIC23.87■■□□□ 1.41
Col17a1Q07563 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Col17a1Q07563 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
Col17a1Q07563 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
Col17a1Q07563 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Col17a1Q07563 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
Col17a1Q07563 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Col17a1Q07563 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
Col17a1Q07563 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC23.87■■□□□ 1.41
Col17a1Q07563 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC23.87■■□□□ 1.41
Col17a1Q07563 Mir1897-201ENSMUST00000122581 272 ntBASIC23.87■■□□□ 1.41
Col17a1Q07563 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC23.87■■□□□ 1.41
Col17a1Q07563 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
Col17a1Q07563 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Col17a1Q07563 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
Col17a1Q07563 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
Col17a1Q07563 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Col17a1Q07563 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC23.86■■□□□ 1.41
Col17a1Q07563 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Col17a1Q07563 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
Col17a1Q07563 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Col17a1Q07563 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Col17a1Q07563 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Col17a1Q07563 Gm23931-201ENSMUST00000103842 109 ntBASIC23.86■■□□□ 1.41
Col17a1Q07563 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Col17a1Q07563 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC23.86■■□□□ 1.41
Col17a1Q07563 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC23.86■■□□□ 1.41
Col17a1Q07563 Gm43068-201ENSMUST00000201095 1273 ntBASIC23.86■■□□□ 1.41
Col17a1Q07563 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Col17a1Q07563 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC23.86■■□□□ 1.41
Col17a1Q07563 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC23.86■■□□□ 1.41
Col17a1Q07563 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Col17a1Q07563 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Col17a1Q07563 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Col17a1Q07563 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Col17a1Q07563 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Col17a1Q07563 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Col17a1Q07563 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Col17a1Q07563 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Col17a1Q07563 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Col17a1Q07563 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
Col17a1Q07563 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC23.85■■□□□ 1.41
Col17a1Q07563 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
Col17a1Q07563 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC23.85■■□□□ 1.41
Col17a1Q07563 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Col17a1Q07563 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Col17a1Q07563 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Col17a1Q07563 Grk6-207ENSMUST00000225925 2769 ntBASIC23.85■■□□□ 1.41
Col17a1Q07563 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
Col17a1Q07563 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
Col17a1Q07563 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Col17a1Q07563 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
Col17a1Q07563 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
Col17a1Q07563 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Col17a1Q07563 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Col17a1Q07563 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Col17a1Q07563 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC23.84■■□□□ 1.41
Col17a1Q07563 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Col17a1Q07563 AA619741-201ENSMUST00000195095 646 ntBASIC23.84■■□□□ 1.41
Col17a1Q07563 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
Col17a1Q07563 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC23.84■■□□□ 1.41
Col17a1Q07563 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Col17a1Q07563 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Col17a1Q07563 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC23.84■■□□□ 1.41
Col17a1Q07563 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
Col17a1Q07563 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC23.83■■□□□ 1.41
Col17a1Q07563 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Col17a1Q07563 Mir1894-201ENSMUST00000122802 81 ntBASIC23.83■■□□□ 1.41
Col17a1Q07563 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
Col17a1Q07563 Gm7390-201ENSMUST00000212452 1216 ntBASIC23.83■■□□□ 1.41
Col17a1Q07563 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
Col17a1Q07563 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
Col17a1Q07563 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
Col17a1Q07563 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
Col17a1Q07563 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC23.83■■□□□ 1.41
Col17a1Q07563 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Col17a1Q07563 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.4
Retrieved 100 of 76,532 protein–RNA pairs in 10.7 ms