Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC13.52□□□□□ -0.25
Nkx3-1P97436 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Nkx3-1P97436 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC13.52□□□□□ -0.25
Nkx3-1P97436 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Nkx3-1P97436 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.25
Nkx3-1P97436 Gm17271-201ENSMUST00000165535 355 ntBASIC13.52□□□□□ -0.25
Nkx3-1P97436 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Nkx3-1P97436 Gm7787-201ENSMUST00000216858 688 ntBASIC13.52□□□□□ -0.25
Nkx3-1P97436 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Nkx3-1P97436 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Nkx3-1P97436 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Nkx3-1P97436 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Nkx3-1P97436 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Nkx3-1P97436 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC13.52□□□□□ -0.25
Nkx3-1P97436 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Nkx3-1P97436 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Nkx3-1P97436 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Nkx3-1P97436 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Nkx3-1P97436 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Nkx3-1P97436 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC13.51□□□□□ -0.25
Nkx3-1P97436 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Gm19164-201ENSMUST00000210667 640 ntBASIC13.51□□□□□ -0.25
Nkx3-1P97436 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Nkx3-1P97436 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Nkx3-1P97436 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Gm6257-201ENSMUST00000163864 910 ntBASIC13.5□□□□□ -0.25
Nkx3-1P97436 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Nkx3-1P97436 AC147366.1-201ENSMUST00000227671 852 ntBASIC13.5□□□□□ -0.25
Nkx3-1P97436 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Gm15500-202ENSMUST00000071641 1019 ntBASIC13.5□□□□□ -0.25
Nkx3-1P97436 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Nkx3-1P97436 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Nkx3-1P97436 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Gm44443-201ENSMUST00000204396 5633 ntBASIC13.49□□□□□ -0.25
Nkx3-1P97436 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC13.49□□□□□ -0.25
Nkx3-1P97436 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC13.49□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 67.2 ms