Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.59
Rfx1P48377 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
Rfx1P48377 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Rfx1P48377 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC18.76■□□□□ 0.59
Rfx1P48377 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx1P48377 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC18.76■□□□□ 0.59
Rfx1P48377 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx1P48377 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx1P48377 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx1P48377 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC18.76■□□□□ 0.59
Rfx1P48377 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx1P48377 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx1P48377 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx1P48377 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx1P48377 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx1P48377 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx1P48377 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx1P48377 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx1P48377 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rfx1P48377 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC18.75■□□□□ 0.59
Rfx1P48377 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rfx1P48377 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rfx1P48377 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC18.75■□□□□ 0.59
Rfx1P48377 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC18.75■□□□□ 0.59
Rfx1P48377 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Rfx1P48377 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rfx1P48377 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
Rfx1P48377 Mir1668-201ENSMUST00000184114 107 ntBASIC18.75■□□□□ 0.59
Rfx1P48377 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rfx1P48377 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rfx1P48377 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rfx1P48377 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rfx1P48377 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rfx1P48377 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rfx1P48377 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rfx1P48377 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rfx1P48377 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Rfx1P48377 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Rfx1P48377 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx1P48377 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx1P48377 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx1P48377 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx1P48377 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx1P48377 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Rfx1P48377 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC18.74■□□□□ 0.59
Rfx1P48377 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Rfx1P48377 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
Rfx1P48377 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx1P48377 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx1P48377 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx1P48377 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx1P48377 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx1P48377 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx1P48377 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx1P48377 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx1P48377 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Rfx1P48377 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx1P48377 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx1P48377 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx1P48377 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx1P48377 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx1P48377 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rfx1P48377 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rfx1P48377 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC18.73■□□□□ 0.59
Rfx1P48377 AC159205.6-201ENSMUST00000224935 887 ntBASIC18.73■□□□□ 0.59
Rfx1P48377 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rfx1P48377 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC18.73■□□□□ 0.59
Rfx1P48377 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rfx1P48377 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rfx1P48377 Gm10605-202ENSMUST00000183019 3198 ntBASIC18.73■□□□□ 0.59
Rfx1P48377 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Rfx1P48377 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rfx1P48377 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rfx1P48377 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Rfx1P48377 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rfx1P48377 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rfx1P48377 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rfx1P48377 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC18.72■□□□□ 0.59
Rfx1P48377 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Rfx1P48377 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC18.72■□□□□ 0.59
Rfx1P48377 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rfx1P48377 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rfx1P48377 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Rfx1P48377 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rfx1P48377 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Rfx1P48377 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
Rfx1P48377 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rfx1P48377 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rfx1P48377 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rfx1P48377 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
Rfx1P48377 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx1P48377 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx1P48377 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx1P48377 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Rfx1P48377 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx1P48377 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx1P48377 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx1P48377 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Rfx1P48377 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx1P48377 Gm13559-201ENSMUST00000120476 863 ntBASIC18.71■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms