Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC17.07■□□□□ 0.32
Chmp6P0C0A3 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Gm45212-201ENSMUST00000205831 3403 ntBASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Umpk-ps-201ENSMUST00000211897 827 ntBASIC17.07■□□□□ 0.32
Chmp6P0C0A3 AC127349.1-201ENSMUST00000224590 266 ntBASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Gm15372-201ENSMUST00000120729 834 ntBASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Gm25745-201ENSMUST00000174945 133 ntBASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chmp6P0C0A3 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Gm7153-201ENSMUST00000117092 455 ntBASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Gm43347-201ENSMUST00000200226 580 ntBASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chmp6P0C0A3 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Chmp6P0C0A3 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC17.04■□□□□ 0.32
Chmp6P0C0A3 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC17.04■□□□□ 0.32
Chmp6P0C0A3 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Chmp6P0C0A3 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
Chmp6P0C0A3 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Chmp6P0C0A3 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Chmp6P0C0A3 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Chmp6P0C0A3 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Chmp6P0C0A3 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Chmp6P0C0A3 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Chmp6P0C0A3 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Chmp6P0C0A3 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
Chmp6P0C0A3 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC17.04■□□□□ 0.32
Chmp6P0C0A3 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC17.04■□□□□ 0.32
Chmp6P0C0A3 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
Chmp6P0C0A3 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC17.04■□□□□ 0.32
Chmp6P0C0A3 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Chmp6P0C0A3 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Chmp6P0C0A3 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
Chmp6P0C0A3 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 43.6 ms