Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Nkx2-4Q9EQM3 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Gm5184-201ENSMUST00000220417 1702 ntBASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Mir8102-201ENSMUST00000184148 139 ntBASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Gm27989-201ENSMUST00000184721 107 ntBASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Gm38294-201ENSMUST00000192831 381 ntBASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nkx2-4Q9EQM3 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Rarb-207ENSMUST00000225921 2756 ntBASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nkx2-4Q9EQM3 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nkx2-4Q9EQM3 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nkx2-4Q9EQM3 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC16.03■□□□□ 0.16
Nkx2-4Q9EQM3 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nkx2-4Q9EQM3 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Nkx2-4Q9EQM3 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC16.03■□□□□ 0.16
Nkx2-4Q9EQM3 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nkx2-4Q9EQM3 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Nkx2-4Q9EQM3 Gm9954-202ENSMUST00000198686 4725 ntBASIC16.03■□□□□ 0.16
Nkx2-4Q9EQM3 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nkx2-4Q9EQM3 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nkx2-4Q9EQM3 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC16.03■□□□□ 0.16
Nkx2-4Q9EQM3 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nkx2-4Q9EQM3 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nkx2-4Q9EQM3 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC16.03■□□□□ 0.16
Nkx2-4Q9EQM3 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nkx2-4Q9EQM3 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC16.03■□□□□ 0.16
Nkx2-4Q9EQM3 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms