Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps28Q9D1C8 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Vps28Q9D1C8 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Vps28Q9D1C8 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps28Q9D1C8 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps28Q9D1C8 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps28Q9D1C8 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps28Q9D1C8 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC16.07■□□□□ 0.16
Vps28Q9D1C8 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps28Q9D1C8 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps28Q9D1C8 AC093043.3-201ENSMUST00000226531 2273 ntBASIC16.07■□□□□ 0.16
Vps28Q9D1C8 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps28Q9D1C8 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps28Q9D1C8 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
Vps28Q9D1C8 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Vps28Q9D1C8 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC16.07■□□□□ 0.16
Vps28Q9D1C8 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC16.07■□□□□ 0.16
Vps28Q9D1C8 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC16.07■□□□□ 0.16
Vps28Q9D1C8 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC16.07■□□□□ 0.16
Vps28Q9D1C8 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps28Q9D1C8 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Vps28Q9D1C8 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps28Q9D1C8 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps28Q9D1C8 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps28Q9D1C8 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC16.07■□□□□ 0.16
Vps28Q9D1C8 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps28Q9D1C8 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps28Q9D1C8 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps28Q9D1C8 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Wnt10b-206ENSMUST00000228546 2709 ntBASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps28Q9D1C8 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Gm25990-201ENSMUST00000102440 86 ntBASIC16.05■□□□□ 0.16
Vps28Q9D1C8 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Gm6257-201ENSMUST00000163864 910 ntBASIC16.05■□□□□ 0.16
Vps28Q9D1C8 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Gm18622-201ENSMUST00000219361 595 ntBASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC16.05■□□□□ 0.16
Vps28Q9D1C8 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC16.04■□□□□ 0.16
Vps28Q9D1C8 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps28Q9D1C8 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
Vps28Q9D1C8 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps28Q9D1C8 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Vps28Q9D1C8 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Vps28Q9D1C8 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps28Q9D1C8 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps28Q9D1C8 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC16.04■□□□□ 0.16
Vps28Q9D1C8 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Vps28Q9D1C8 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Vps28Q9D1C8 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Vps28Q9D1C8 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Vps28Q9D1C8 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Vps28Q9D1C8 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Vps28Q9D1C8 AC117588.1-201ENSMUST00000228510 999 ntBASIC16.04■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms