Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trim56Q80VI1 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trim56Q80VI1 AV026068-213ENSMUST00000223675 1171 ntBASIC18.5■□□□□ 0.55
Trim56Q80VI1 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC18.5■□□□□ 0.55
Trim56Q80VI1 Gm15590-201ENSMUST00000078419 552 ntBASIC18.5■□□□□ 0.55
Trim56Q80VI1 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim56Q80VI1 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim56Q80VI1 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim56Q80VI1 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim56Q80VI1 Ccdc166-201ENSMUST00000182172 2584 ntBASIC18.5■□□□□ 0.55
Trim56Q80VI1 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim56Q80VI1 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim56Q80VI1 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim56Q80VI1 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC18.5■□□□□ 0.55
Trim56Q80VI1 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim56Q80VI1 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim56Q80VI1 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim56Q80VI1 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim56Q80VI1 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim56Q80VI1 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Trim56Q80VI1 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim56Q80VI1 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim56Q80VI1 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim56Q80VI1 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim56Q80VI1 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim56Q80VI1 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC18.49■□□□□ 0.55
Trim56Q80VI1 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC18.49■□□□□ 0.55
Trim56Q80VI1 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Trim56Q80VI1 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC18.49■□□□□ 0.55
Trim56Q80VI1 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Trim56Q80VI1 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim56Q80VI1 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim56Q80VI1 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Trim56Q80VI1 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim56Q80VI1 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC18.49■□□□□ 0.55
Trim56Q80VI1 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim56Q80VI1 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC18.49■□□□□ 0.55
Trim56Q80VI1 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim56Q80VI1 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim56Q80VI1 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim56Q80VI1 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trim56Q80VI1 AC154527.4-201ENSMUST00000224364 1667 ntBASIC18.48■□□□□ 0.55
Trim56Q80VI1 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim56Q80VI1 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trim56Q80VI1 AC133083.1-201ENSMUST00000221736 2209 ntBASIC18.48■□□□□ 0.55
Trim56Q80VI1 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC18.48■□□□□ 0.55
Trim56Q80VI1 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trim56Q80VI1 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC18.48■□□□□ 0.55
Trim56Q80VI1 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC18.48■□□□□ 0.55
Trim56Q80VI1 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim56Q80VI1 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim56Q80VI1 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC18.48■□□□□ 0.55
Trim56Q80VI1 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim56Q80VI1 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim56Q80VI1 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC18.48■□□□□ 0.55
Trim56Q80VI1 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim56Q80VI1 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC18.48■□□□□ 0.55
Trim56Q80VI1 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trim56Q80VI1 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Trim56Q80VI1 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Gm13036-201ENSMUST00000117799 748 ntBASIC18.47■□□□□ 0.55
Trim56Q80VI1 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Trim56Q80VI1 AC159093.1-201ENSMUST00000227779 380 ntBASIC18.47■□□□□ 0.55
Trim56Q80VI1 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC18.47■□□□□ 0.55
Trim56Q80VI1 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim56Q80VI1 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim56Q80VI1 Gm42918-201ENSMUST00000199249 1580 ntBASIC18.47■□□□□ 0.55
Trim56Q80VI1 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim56Q80VI1 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trim56Q80VI1 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trim56Q80VI1 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Trim56Q80VI1 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Trim56Q80VI1 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim56Q80VI1 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim56Q80VI1 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC18.46■□□□□ 0.55
Trim56Q80VI1 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trim56Q80VI1 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC18.46■□□□□ 0.55
Trim56Q80VI1 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC18.46■□□□□ 0.55
Trim56Q80VI1 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms