Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3bQ3ULL6 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3bQ3ULL6 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3bQ3ULL6 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC16.81■□□□□ 0.28
Upf3bQ3ULL6 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3bQ3ULL6 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Rbfox2-207ENSMUST00000227533 1041 ntBASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Upf3bQ3ULL6 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 AC159301.1-201ENSMUST00000225130 1182 ntBASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Upf3bQ3ULL6 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Gm5837-201ENSMUST00000191844 1369 ntBASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Gm18622-201ENSMUST00000219361 595 ntBASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 AC117588.1-201ENSMUST00000228510 999 ntBASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf3bQ3ULL6 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Upf3bQ3ULL6 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Upf3bQ3ULL6 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Upf3bQ3ULL6 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Upf3bQ3ULL6 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Upf3bQ3ULL6 Gm8097-201ENSMUST00000117903 829 ntBASIC16.77■□□□□ 0.28
Upf3bQ3ULL6 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Upf3bQ3ULL6 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
Upf3bQ3ULL6 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC16.77■□□□□ 0.28
Upf3bQ3ULL6 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC16.77■□□□□ 0.28
Upf3bQ3ULL6 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Upf3bQ3ULL6 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Upf3bQ3ULL6 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Upf3bQ3ULL6 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Upf3bQ3ULL6 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Upf3bQ3ULL6 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
Upf3bQ3ULL6 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms