Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Col1a1P11087 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col1a1P11087 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Col1a1P11087 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col1a1P11087 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col1a1P11087 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col1a1P11087 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col1a1P11087 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Col1a1P11087 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Col1a1P11087 Gm11424-201ENSMUST00000121929 829 ntBASIC18.25■□□□□ 0.51
Col1a1P11087 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC18.25■□□□□ 0.51
Col1a1P11087 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col1a1P11087 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col1a1P11087 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col1a1P11087 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col1a1P11087 AC115863.1-201ENSMUST00000214815 1813 ntBASIC18.24■□□□□ 0.51
Col1a1P11087 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC18.24■□□□□ 0.51
Col1a1P11087 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col1a1P11087 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Col1a1P11087 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col1a1P11087 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col1a1P11087 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col1a1P11087 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Col1a1P11087 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col1a1P11087 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col1a1P11087 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col1a1P11087 Gm12151-201ENSMUST00000121374 290 ntBASIC18.24■□□□□ 0.51
Col1a1P11087 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Col1a1P11087 Gm10499-201ENSMUST00000174094 934 ntBASIC18.24■□□□□ 0.51
Col1a1P11087 Gm27306-201ENSMUST00000183970 107 ntBASIC18.24■□□□□ 0.51
Col1a1P11087 Gm37277-201ENSMUST00000194052 1111 ntBASIC18.24■□□□□ 0.51
Col1a1P11087 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col1a1P11087 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Col1a1P11087 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Col1a1P11087 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col1a1P11087 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col1a1P11087 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Col1a1P11087 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col1a1P11087 Prkcz2-201ENSMUST00000206136 1756 ntBASIC18.24■□□□□ 0.51
Col1a1P11087 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Col1a1P11087 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Col1a1P11087 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col1a1P11087 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col1a1P11087 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col1a1P11087 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col1a1P11087 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col1a1P11087 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col1a1P11087 Gm45774-201ENSMUST00000211992 2665 ntBASIC18.23■□□□□ 0.51
Col1a1P11087 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col1a1P11087 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col1a1P11087 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC18.23■□□□□ 0.51
Col1a1P11087 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Col1a1P11087 Gm27618-201ENSMUST00000183671 60 ntBASIC18.23■□□□□ 0.51
Col1a1P11087 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
Col1a1P11087 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col1a1P11087 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col1a1P11087 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col1a1P11087 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Col1a1P11087 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col1a1P11087 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC18.23■□□□□ 0.51
Col1a1P11087 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Col1a1P11087 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col1a1P11087 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col1a1P11087 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col1a1P11087 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col1a1P11087 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col1a1P11087 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col1a1P11087 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col1a1P11087 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Col1a1P11087 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC18.22■□□□□ 0.51
Col1a1P11087 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col1a1P11087 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col1a1P11087 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col1a1P11087 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC18.22■□□□□ 0.51
Col1a1P11087 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col1a1P11087 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC18.22■□□□□ 0.51
Col1a1P11087 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Col1a1P11087 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC18.22■□□□□ 0.51
Col1a1P11087 AC160980.1-201ENSMUST00000224136 970 ntBASIC18.22■□□□□ 0.51
Col1a1P11087 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col1a1P11087 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col1a1P11087 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col1a1P11087 AC130669.1-201ENSMUST00000228537 1672 ntBASIC18.22■□□□□ 0.51
Col1a1P11087 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Col1a1P11087 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col1a1P11087 Grk6-207ENSMUST00000225925 2769 ntBASIC18.22■□□□□ 0.51
Col1a1P11087 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col1a1P11087 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
Col1a1P11087 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col1a1P11087 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Col1a1P11087 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC18.22■□□□□ 0.51
Col1a1P11087 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col1a1P11087 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC18.21■□□□□ 0.51
Col1a1P11087 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC18.21■□□□□ 0.51
Col1a1P11087 Gm9824-201ENSMUST00000178707 561 ntBASIC18.21■□□□□ 0.51
Col1a1P11087 Mir7684-201ENSMUST00000183858 60 ntBASIC18.21■□□□□ 0.51
Col1a1P11087 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col1a1P11087 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col1a1P11087 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Col1a1P11087 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms