Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hoxd3P09027 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hoxd3P09027 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hoxd3P09027 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC12.21□□□□□ -0.45
Hoxd3P09027 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC12.21□□□□□ -0.45
Hoxd3P09027 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC12.21□□□□□ -0.45
Hoxd3P09027 Gm14716-201ENSMUST00000120138 718 ntBASIC12.21□□□□□ -0.45
Hoxd3P09027 Gm11780-201ENSMUST00000136880 516 ntBASIC12.21□□□□□ -0.45
Hoxd3P09027 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hoxd3P09027 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hoxd3P09027 Gm21868-201ENSMUST00000185623 1230 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Hoxd3P09027 Gm20803-202ENSMUST00000190968 1230 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Hoxd3P09027 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hoxd3P09027 Gm6089-201ENSMUST00000197666 938 ntBASIC12.21□□□□□ -0.45
Hoxd3P09027 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Hoxd3P09027 Gm18622-201ENSMUST00000219361 595 ntBASIC12.21□□□□□ -0.45
Hoxd3P09027 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hoxd3P09027 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hoxd3P09027 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hoxd3P09027 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Hoxd3P09027 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hoxd3P09027 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hoxd3P09027 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Hoxd3P09027 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Hoxd3P09027 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
Hoxd3P09027 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Hoxd3P09027 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Hoxd3P09027 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Hoxd3P09027 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.46
Hoxd3P09027 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Hoxd3P09027 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Hoxd3P09027 Gm37500-201ENSMUST00000192059 1443 ntBASIC12.2□□□□□ -0.46
Hoxd3P09027 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Hoxd3P09027 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC12.2□□□□□ -0.46
Hoxd3P09027 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Hoxd3P09027 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
Hoxd3P09027 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Hoxd3P09027 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Hoxd3P09027 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC12.2□□□□□ -0.46
Hoxd3P09027 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hoxd3P09027 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Hoxd3P09027 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Hoxd3P09027 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC12.19□□□□□ -0.46
Hoxd3P09027 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
Hoxd3P09027 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC12.19□□□□□ -0.46
Hoxd3P09027 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC12.19□□□□□ -0.46
Hoxd3P09027 Mir5126-201ENSMUST00000175513 77 ntBASIC12.19□□□□□ -0.46
Hoxd3P09027 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC12.19□□□□□ -0.46
Hoxd3P09027 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC12.19□□□□□ -0.46
Hoxd3P09027 Gm18206-201ENSMUST00000207027 926 ntBASIC12.19□□□□□ -0.46
Hoxd3P09027 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC12.19□□□□□ -0.46
Hoxd3P09027 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 AC117588.1-201ENSMUST00000228510 999 ntBASIC12.19□□□□□ -0.46
Hoxd3P09027 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC12.19□□□□□ -0.46
Hoxd3P09027 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hoxd3P09027 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms