Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col4a1P02463 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC19.16■□□□□ 0.66
Col4a1P02463 Gm45293-201ENSMUST00000209754 1812 ntBASIC19.16■□□□□ 0.66
Col4a1P02463 Fgf17-202ENSMUST00000227123 1336 ntBASIC19.15■□□□□ 0.66
Col4a1P02463 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col4a1P02463 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col4a1P02463 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col4a1P02463 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col4a1P02463 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col4a1P02463 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col4a1P02463 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col4a1P02463 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col4a1P02463 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col4a1P02463 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Col4a1P02463 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col4a1P02463 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Col4a1P02463 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col4a1P02463 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col4a1P02463 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col4a1P02463 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col4a1P02463 Gm7901-201ENSMUST00000120430 1597 ntBASIC19.15■□□□□ 0.66
Col4a1P02463 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
Col4a1P02463 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col4a1P02463 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Col4a1P02463 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Col4a1P02463 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col4a1P02463 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col4a1P02463 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col4a1P02463 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col4a1P02463 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
Col4a1P02463 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col4a1P02463 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col4a1P02463 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col4a1P02463 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col4a1P02463 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col4a1P02463 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col4a1P02463 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col4a1P02463 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col4a1P02463 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col4a1P02463 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Col4a1P02463 AC126408.1-201ENSMUST00000225184 523 ntBASIC19.14■□□□□ 0.65
Col4a1P02463 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col4a1P02463 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col4a1P02463 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col4a1P02463 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Col4a1P02463 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col4a1P02463 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
Col4a1P02463 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Col4a1P02463 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Col4a1P02463 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col4a1P02463 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col4a1P02463 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC19.13■□□□□ 0.65
Col4a1P02463 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col4a1P02463 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col4a1P02463 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col4a1P02463 Gm7336-201ENSMUST00000107041 1232 ntBASIC19.13■□□□□ 0.65
Col4a1P02463 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Col4a1P02463 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC19.13■□□□□ 0.65
Col4a1P02463 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
Col4a1P02463 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Col4a1P02463 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC19.13■□□□□ 0.65
Col4a1P02463 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC19.13■□□□□ 0.65
Col4a1P02463 AC140397.2-201ENSMUST00000224213 834 ntBASIC19.13■□□□□ 0.65
Col4a1P02463 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col4a1P02463 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col4a1P02463 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Col4a1P02463 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col4a1P02463 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC19.13■□□□□ 0.65
Col4a1P02463 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col4a1P02463 Gm13410-201ENSMUST00000117058 1415 ntBASIC19.12■□□□□ 0.65
Col4a1P02463 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC19.12■□□□□ 0.65
Col4a1P02463 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a1P02463 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Col4a1P02463 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a1P02463 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a1P02463 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a1P02463 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a1P02463 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Col4a1P02463 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Col4a1P02463 Gm6973-201ENSMUST00000117080 721 ntBASIC19.12■□□□□ 0.65
Col4a1P02463 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a1P02463 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a1P02463 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a1P02463 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a1P02463 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a1P02463 Gm20628-201ENSMUST00000177363 3215 ntBASIC19.12■□□□□ 0.65
Col4a1P02463 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a1P02463 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a1P02463 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a1P02463 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
Col4a1P02463 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a1P02463 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC19.11■□□□□ 0.65
Col4a1P02463 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Col4a1P02463 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col4a1P02463 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Col4a1P02463 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC19.11■□□□□ 0.65
Col4a1P02463 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col4a1P02463 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC19.11■□□□□ 0.65
Col4a1P02463 Gm22175-201ENSMUST00000175007 78 ntBASIC19.11■□□□□ 0.65
Col4a1P02463 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms