Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 AC093043.3-201ENSMUST00000226531 2273 ntBASIC14.83□□□□□ -0.03
Trim3Q9R1R2 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.03
Trim3Q9R1R2 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Trim3Q9R1R2 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
Trim3Q9R1R2 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Trim3Q9R1R2 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Trim3Q9R1R2 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim3Q9R1R2 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim3Q9R1R2 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Trim3Q9R1R2 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim3Q9R1R2 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim3Q9R1R2 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Trim3Q9R1R2 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC14.83□□□□□ -0.04
Trim3Q9R1R2 Gm44430-201ENSMUST00000203376 995 ntBASIC14.83□□□□□ -0.04
Trim3Q9R1R2 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim3Q9R1R2 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim3Q9R1R2 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Trim3Q9R1R2 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim3Q9R1R2 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Trim3Q9R1R2 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim3Q9R1R2 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim3Q9R1R2 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim3Q9R1R2 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim3Q9R1R2 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim3Q9R1R2 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim3Q9R1R2 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC14.81□□□□□ -0.04
Trim3Q9R1R2 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC14.8□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms