Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC18.51■□□□□ 0.55
Scn11aQ9R053 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Scn11aQ9R053 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Scn11aQ9R053 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Scn11aQ9R053 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Scn11aQ9R053 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Scn11aQ9R053 Gm9385-201ENSMUST00000117563 472 ntBASIC18.5■□□□□ 0.55
Scn11aQ9R053 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Scn11aQ9R053 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Scn11aQ9R053 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Scn11aQ9R053 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Scn11aQ9R053 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC18.5■□□□□ 0.55
Scn11aQ9R053 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Scn11aQ9R053 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Scn11aQ9R053 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Scn11aQ9R053 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC18.5■□□□□ 0.55
Scn11aQ9R053 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Scn11aQ9R053 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Scn11aQ9R053 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Scn11aQ9R053 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Scn11aQ9R053 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Scn11aQ9R053 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Scn11aQ9R053 Mir1895-201ENSMUST00000122615 79 ntBASIC18.5■□□□□ 0.55
Scn11aQ9R053 Mir6990-201ENSMUST00000183724 91 ntBASIC18.5■□□□□ 0.55
Scn11aQ9R053 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Scn11aQ9R053 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC18.5■□□□□ 0.55
Scn11aQ9R053 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Scn11aQ9R053 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Scn11aQ9R053 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Scn11aQ9R053 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Scn11aQ9R053 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Scn11aQ9R053 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Scn11aQ9R053 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Scn11aQ9R053 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Scn11aQ9R053 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC18.49■□□□□ 0.55
Scn11aQ9R053 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC18.49■□□□□ 0.55
Scn11aQ9R053 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Scn11aQ9R053 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC18.49■□□□□ 0.55
Scn11aQ9R053 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Scn11aQ9R053 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Scn11aQ9R053 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Scn11aQ9R053 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Scn11aQ9R053 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Scn11aQ9R053 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Scn11aQ9R053 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC18.48■□□□□ 0.55
Scn11aQ9R053 Gm17271-201ENSMUST00000165535 355 ntBASIC18.48■□□□□ 0.55
Scn11aQ9R053 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Scn11aQ9R053 Gm25948-201ENSMUST00000175334 112 ntBASIC18.48■□□□□ 0.55
Scn11aQ9R053 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Scn11aQ9R053 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC18.48■□□□□ 0.55
Scn11aQ9R053 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Scn11aQ9R053 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Scn11aQ9R053 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Scn11aQ9R053 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Scn11aQ9R053 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Scn11aQ9R053 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Scn11aQ9R053 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Scn11aQ9R053 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC18.48■□□□□ 0.55
Scn11aQ9R053 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Scn11aQ9R053 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Scn11aQ9R053 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC18.47■□□□□ 0.55
Scn11aQ9R053 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC18.47■□□□□ 0.55
Scn11aQ9R053 AC131187.1-201ENSMUST00000224567 809 ntBASIC18.47■□□□□ 0.55
Scn11aQ9R053 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Scn11aQ9R053 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Scn11aQ9R053 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Scn11aQ9R053 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Scn11aQ9R053 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Scn11aQ9R053 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Scn11aQ9R053 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Scn11aQ9R053 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Scn11aQ9R053 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Scn11aQ9R053 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Scn11aQ9R053 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Scn11aQ9R053 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC18.47■□□□□ 0.55
Scn11aQ9R053 Gm20553-201ENSMUST00000204205 844 ntBASIC18.47■□□□□ 0.55
Scn11aQ9R053 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Scn11aQ9R053 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Scn11aQ9R053 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Scn11aQ9R053 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Scn11aQ9R053 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Scn11aQ9R053 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Scn11aQ9R053 Gm7901-201ENSMUST00000120430 1597 ntBASIC18.46■□□□□ 0.55
Scn11aQ9R053 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Scn11aQ9R053 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Scn11aQ9R053 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Scn11aQ9R053 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Scn11aQ9R053 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Scn11aQ9R053 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC18.46■□□□□ 0.55
Scn11aQ9R053 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Scn11aQ9R053 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC18.46■□□□□ 0.55
Scn11aQ9R053 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Scn11aQ9R053 Gm5628-201ENSMUST00000222318 1049 ntBASIC18.46■□□□□ 0.55
Scn11aQ9R053 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC18.46■□□□□ 0.55
Scn11aQ9R053 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Scn11aQ9R053 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Scn11aQ9R053 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC18.46■□□□□ 0.55
Scn11aQ9R053 Gm10154-201ENSMUST00000084445 354 ntBASIC18.46■□□□□ 0.55
Scn11aQ9R053 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
Scn11aQ9R053 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms