Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim56Q80VI1 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim56Q80VI1 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim56Q80VI1 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim56Q80VI1 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim56Q80VI1 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
Trim56Q80VI1 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trim56Q80VI1 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC18.54■□□□□ 0.56
Trim56Q80VI1 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
Trim56Q80VI1 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim56Q80VI1 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim56Q80VI1 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Trim56Q80VI1 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim56Q80VI1 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Trim56Q80VI1 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Trim56Q80VI1 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim56Q80VI1 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim56Q80VI1 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim56Q80VI1 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC18.53■□□□□ 0.56
Trim56Q80VI1 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC18.53■□□□□ 0.56
Trim56Q80VI1 Mir5126-201ENSMUST00000175513 77 ntBASIC18.53■□□□□ 0.56
Trim56Q80VI1 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC18.53■□□□□ 0.56
Trim56Q80VI1 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trim56Q80VI1 AC138767.1-201ENSMUST00000222661 415 ntBASIC18.53■□□□□ 0.56
Trim56Q80VI1 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Trim56Q80VI1 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim56Q80VI1 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Trim56Q80VI1 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Trim56Q80VI1 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim56Q80VI1 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim56Q80VI1 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC18.53■□□□□ 0.56
Trim56Q80VI1 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC18.53■□□□□ 0.56
Trim56Q80VI1 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trim56Q80VI1 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim56Q80VI1 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim56Q80VI1 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim56Q80VI1 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Gm2308-201ENSMUST00000166539 1004 ntBASIC18.52■□□□□ 0.56
Trim56Q80VI1 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Gm18733-201ENSMUST00000173950 856 ntBASIC18.52■□□□□ 0.56
Trim56Q80VI1 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC18.52■□□□□ 0.56
Trim56Q80VI1 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC18.52■□□□□ 0.56
Trim56Q80VI1 AC122024.2-201ENSMUST00000220086 871 ntBASIC18.52■□□□□ 0.56
Trim56Q80VI1 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trim56Q80VI1 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trim56Q80VI1 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim56Q80VI1 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim56Q80VI1 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim56Q80VI1 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trim56Q80VI1 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim56Q80VI1 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Trim56Q80VI1 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Trim56Q80VI1 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim56Q80VI1 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trim56Q80VI1 AC158538.2-201ENSMUST00000225455 906 ntBASIC18.51■□□□□ 0.55
Trim56Q80VI1 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim56Q80VI1 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim56Q80VI1 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC18.51■□□□□ 0.55
Trim56Q80VI1 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim56Q80VI1 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim56Q80VI1 Gm13337-201ENSMUST00000119183 1594 ntBASIC18.51■□□□□ 0.55
Trim56Q80VI1 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim56Q80VI1 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim56Q80VI1 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
Trim56Q80VI1 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC18.5■□□□□ 0.55
Trim56Q80VI1 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC18.5■□□□□ 0.55
Trim56Q80VI1 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim56Q80VI1 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim56Q80VI1 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim56Q80VI1 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim56Q80VI1 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim56Q80VI1 Gm7222-201ENSMUST00000117512 906 ntBASIC18.5■□□□□ 0.55
Trim56Q80VI1 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC18.5■□□□□ 0.55
Trim56Q80VI1 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trim56Q80VI1 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms