Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Gm42670-201ENSMUST00000201816 1292 ntBASIC15.31■□□□□ 0.04
Ubfd1Q78JW9 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ubfd1Q78JW9 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ubfd1Q78JW9 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ubfd1Q78JW9 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ubfd1Q78JW9 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ubfd1Q78JW9 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
Ubfd1Q78JW9 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ubfd1Q78JW9 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ubfd1Q78JW9 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Ubfd1Q78JW9 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ubfd1Q78JW9 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 Gm15467-201ENSMUST00000120582 445 ntBASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ubfd1Q78JW9 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Gm43072-201ENSMUST00000200283 1671 ntBASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Gm11185-201ENSMUST00000117732 1007 ntBASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Gm11779-201ENSMUST00000118541 368 ntBASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Gm9727-201ENSMUST00000161387 555 ntBASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 AC159093.1-201ENSMUST00000227779 380 ntBASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ubfd1Q78JW9 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Gm5264-201ENSMUST00000190584 848 ntBASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 AC132104.2-201ENSMUST00000215011 266 ntBASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 AC158538.2-201ENSMUST00000225455 906 ntBASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ubfd1Q78JW9 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Ubfd1Q78JW9 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ubfd1Q78JW9 Gm26917-202ENSMUST00000192833 3329 ntBASIC15.27■□□□□ 0.04
Ubfd1Q78JW9 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms