Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim58Q5NCC9 Gm7367-201ENSMUST00000057611 492 ntBASIC19.93■□□□□ 0.78
Trim58Q5NCC9 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim58Q5NCC9 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim58Q5NCC9 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim58Q5NCC9 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim58Q5NCC9 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim58Q5NCC9 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim58Q5NCC9 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim58Q5NCC9 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim58Q5NCC9 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Trim58Q5NCC9 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Trim58Q5NCC9 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim58Q5NCC9 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC19.92■□□□□ 0.78
Trim58Q5NCC9 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC19.92■□□□□ 0.78
Trim58Q5NCC9 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Trim58Q5NCC9 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim58Q5NCC9 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC19.92■□□□□ 0.78
Trim58Q5NCC9 Prkcz2-201ENSMUST00000206136 1756 ntBASIC19.92■□□□□ 0.78
Trim58Q5NCC9 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
Trim58Q5NCC9 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Trim58Q5NCC9 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim58Q5NCC9 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Trim58Q5NCC9 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim58Q5NCC9 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
Trim58Q5NCC9 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim58Q5NCC9 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim58Q5NCC9 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Trim58Q5NCC9 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Trim58Q5NCC9 Gm15372-201ENSMUST00000120729 834 ntBASIC19.9■□□□□ 0.78
Trim58Q5NCC9 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
Trim58Q5NCC9 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Trim58Q5NCC9 Gm27867-201ENSMUST00000184778 125 ntBASIC19.9■□□□□ 0.78
Trim58Q5NCC9 AC153889.1-201ENSMUST00000219257 330 ntBASIC19.9■□□□□ 0.78
Trim58Q5NCC9 AC124569.2-201ENSMUST00000225998 818 ntBASIC19.9■□□□□ 0.78
Trim58Q5NCC9 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC19.9■□□□□ 0.78
Trim58Q5NCC9 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Trim58Q5NCC9 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim58Q5NCC9 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim58Q5NCC9 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim58Q5NCC9 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim58Q5NCC9 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim58Q5NCC9 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Trim58Q5NCC9 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim58Q5NCC9 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim58Q5NCC9 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
Trim58Q5NCC9 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim58Q5NCC9 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim58Q5NCC9 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Trim58Q5NCC9 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Trim58Q5NCC9 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC19.89■□□□□ 0.77
Trim58Q5NCC9 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Trim58Q5NCC9 Gm25745-201ENSMUST00000174945 133 ntBASIC19.89■□□□□ 0.77
Trim58Q5NCC9 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim58Q5NCC9 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC19.89■□□□□ 0.77
Trim58Q5NCC9 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim58Q5NCC9 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim58Q5NCC9 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim58Q5NCC9 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim58Q5NCC9 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim58Q5NCC9 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Trim58Q5NCC9 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim58Q5NCC9 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim58Q5NCC9 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Trim58Q5NCC9 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC19.88■□□□□ 0.77
Trim58Q5NCC9 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Trim58Q5NCC9 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
Trim58Q5NCC9 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim58Q5NCC9 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Trim58Q5NCC9 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Trim58Q5NCC9 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Trim58Q5NCC9 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim58Q5NCC9 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim58Q5NCC9 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
Trim58Q5NCC9 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim58Q5NCC9 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC19.88■□□□□ 0.77
Trim58Q5NCC9 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms