Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 AC093043.3-201ENSMUST00000226531 2273 ntBASIC16.85■□□□□ 0.29
Upf3bQ3ULL6 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Upf3bQ3ULL6 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Upf3bQ3ULL6 Gm24589-201ENSMUST00000116692 94 ntBASIC16.85■□□□□ 0.29
Upf3bQ3ULL6 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC16.85■□□□□ 0.29
Upf3bQ3ULL6 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Upf3bQ3ULL6 Gm43347-201ENSMUST00000200226 580 ntBASIC16.85■□□□□ 0.29
Upf3bQ3ULL6 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Upf3bQ3ULL6 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Upf3bQ3ULL6 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Upf3bQ3ULL6 Gm42473-201ENSMUST00000201056 2291 ntBASIC16.85■□□□□ 0.29
Upf3bQ3ULL6 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Upf3bQ3ULL6 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Upf3bQ3ULL6 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Upf3bQ3ULL6 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Gm27459-201ENSMUST00000184860 107 ntBASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3bQ3ULL6 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
Upf3bQ3ULL6 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf3bQ3ULL6 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
Upf3bQ3ULL6 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
Upf3bQ3ULL6 Gm7153-201ENSMUST00000117092 455 ntBASIC16.83■□□□□ 0.28
Upf3bQ3ULL6 Gm13830-205ENSMUST00000201195 1155 ntBASIC16.83■□□□□ 0.28
Upf3bQ3ULL6 Gm8784-201ENSMUST00000222096 1435 ntBASIC16.83■□□□□ 0.28
Upf3bQ3ULL6 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf3bQ3ULL6 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf3bQ3ULL6 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf3bQ3ULL6 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf3bQ3ULL6 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf3bQ3ULL6 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf3bQ3ULL6 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf3bQ3ULL6 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Upf3bQ3ULL6 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC16.83■□□□□ 0.28
Upf3bQ3ULL6 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC16.83■□□□□ 0.28
Upf3bQ3ULL6 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Gm8655-201ENSMUST00000221159 852 ntBASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
Upf3bQ3ULL6 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3bQ3ULL6 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3bQ3ULL6 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3bQ3ULL6 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3bQ3ULL6 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
Upf3bQ3ULL6 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3bQ3ULL6 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC16.81■□□□□ 0.28
Upf3bQ3ULL6 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3bQ3ULL6 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Upf3bQ3ULL6 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3bQ3ULL6 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3bQ3ULL6 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3bQ3ULL6 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3bQ3ULL6 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3bQ3ULL6 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Upf3bQ3ULL6 AC133083.1-201ENSMUST00000221736 2209 ntBASIC16.81■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms