Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Nkx3-1P97436 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Nkx3-1P97436 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Nkx3-1P97436 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
Nkx3-1P97436 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.23
Nkx3-1P97436 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
Nkx3-1P97436 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
Nkx3-1P97436 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Nkx3-1P97436 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.23
Nkx3-1P97436 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Gm4913-201ENSMUST00000117075 1290 ntBASIC13.58□□□□□ -0.24
Nkx3-1P97436 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Nkx3-1P97436 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC13.58□□□□□ -0.24
Nkx3-1P97436 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Nkx3-1P97436 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Nkx3-1P97436 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Gm8839-201ENSMUST00000121279 1645 ntBASIC13.57□□□□□ -0.24
Nkx3-1P97436 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Zkscan3-208ENSMUST00000224820 5398 ntBASIC13.57□□□□□ -0.24
Nkx3-1P97436 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC13.57□□□□□ -0.24
Nkx3-1P97436 AC151286.1-201ENSMUST00000198489 145 ntBASIC13.57□□□□□ -0.24
Nkx3-1P97436 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Nkx3-1P97436 AC093926.2-201ENSMUST00000214468 1228 ntBASIC13.57□□□□□ -0.24
Nkx3-1P97436 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Gm5648-201ENSMUST00000122244 1587 ntBASIC13.57□□□□□ -0.24
Nkx3-1P97436 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
Nkx3-1P97436 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Nkx3-1P97436 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Nkx3-1P97436 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Nkx3-1P97436 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC13.56□□□□□ -0.24
Nkx3-1P97436 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Nkx3-1P97436 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Nkx3-1P97436 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Nkx3-1P97436 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Nkx3-1P97436 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Nkx3-1P97436 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Nkx3-1P97436 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Nkx3-1P97436 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC13.56□□□□□ -0.24
Nkx3-1P97436 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Nkx3-1P97436 H2af-ps-201ENSMUST00000119066 295 ntBASIC13.56□□□□□ -0.24
Nkx3-1P97436 Gm15358-201ENSMUST00000119249 520 ntBASIC13.56□□□□□ -0.24
Nkx3-1P97436 Gm26308-201ENSMUST00000157768 69 ntBASIC13.56□□□□□ -0.24
Nkx3-1P97436 Gm4899-201ENSMUST00000178708 719 ntBASIC13.56□□□□□ -0.24
Nkx3-1P97436 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC13.56□□□□□ -0.24
Nkx3-1P97436 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Nkx3-1P97436 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Nkx3-1P97436 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Nkx3-1P97436 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Nkx3-1P97436 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Nkx3-1P97436 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms