Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Shmt1P50431 Gm12350-201ENSMUST00000121208 462 ntBASIC16.63■□□□□ 0.25
Shmt1P50431 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Gm27525-201ENSMUST00000184465 107 ntBASIC16.63■□□□□ 0.25
Shmt1P50431 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC16.63■□□□□ 0.25
Shmt1P50431 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC16.63■□□□□ 0.25
Shmt1P50431 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC16.63■□□□□ 0.25
Shmt1P50431 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Shmt1P50431 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Gm3928-201ENSMUST00000121141 1307 ntBASIC16.63■□□□□ 0.25
Shmt1P50431 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Shmt1P50431 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shmt1P50431 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shmt1P50431 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shmt1P50431 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Shmt1P50431 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC16.62■□□□□ 0.25
Shmt1P50431 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Shmt1P50431 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shmt1P50431 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
Shmt1P50431 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Shmt1P50431 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Shmt1P50431 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Shmt1P50431 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC16.62■□□□□ 0.25
Shmt1P50431 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Shmt1P50431 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shmt1P50431 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Shmt1P50431 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shmt1P50431 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Shmt1P50431 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shmt1P50431 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Shmt1P50431 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Shmt1P50431 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
Shmt1P50431 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC16.61■□□□□ 0.25
Shmt1P50431 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Shmt1P50431 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Shmt1P50431 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Shmt1P50431 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Shmt1P50431 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Shmt1P50431 Gm6550-201ENSMUST00000187574 993 ntBASIC16.61■□□□□ 0.25
Shmt1P50431 AC093926.2-201ENSMUST00000214468 1228 ntBASIC16.61■□□□□ 0.25
Shmt1P50431 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Shmt1P50431 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Shmt1P50431 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Shmt1P50431 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Shmt1P50431 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Shmt1P50431 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Shmt1P50431 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Shmt1P50431 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC16.61■□□□□ 0.25
Shmt1P50431 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Shmt1P50431 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Shmt1P50431 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Shmt1P50431 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shmt1P50431 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shmt1P50431 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC16.6■□□□□ 0.25
Shmt1P50431 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shmt1P50431 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shmt1P50431 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shmt1P50431 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shmt1P50431 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
Shmt1P50431 Gm8344-201ENSMUST00000119813 856 ntBASIC16.6■□□□□ 0.25
Shmt1P50431 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC16.6■□□□□ 0.25
Shmt1P50431 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC16.6■□□□□ 0.25
Shmt1P50431 Gm5682-201ENSMUST00000173402 505 ntBASIC16.6■□□□□ 0.25
Shmt1P50431 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shmt1P50431 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC16.6■□□□□ 0.25
Shmt1P50431 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shmt1P50431 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shmt1P50431 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shmt1P50431 App-207ENSMUST00000227737 2827 ntBASIC16.6■□□□□ 0.25
Shmt1P50431 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Shmt1P50431 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Shmt1P50431 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shmt1P50431 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC16.6■□□□□ 0.25
Shmt1P50431 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shmt1P50431 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Shmt1P50431 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shmt1P50431 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Shmt1P50431 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
Shmt1P50431 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Shmt1P50431 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
Shmt1P50431 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Shmt1P50431 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Shmt1P50431 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Shmt1P50431 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Shmt1P50431 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Shmt1P50431 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Shmt1P50431 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC16.59■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 50 ms