Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col18a1P39061 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col18a1P39061 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col18a1P39061 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Col18a1P39061 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC20.77■□□□□ 0.91
Col18a1P39061 Gm4875-201ENSMUST00000118257 786 ntBASIC20.77■□□□□ 0.91
Col18a1P39061 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
Col18a1P39061 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Col18a1P39061 Gm8602-201ENSMUST00000184045 607 ntBASIC20.77■□□□□ 0.91
Col18a1P39061 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC20.77■□□□□ 0.91
Col18a1P39061 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC20.77■□□□□ 0.91
Col18a1P39061 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
Col18a1P39061 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Col18a1P39061 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Col18a1P39061 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
Col18a1P39061 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
Col18a1P39061 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col18a1P39061 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col18a1P39061 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Col18a1P39061 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col18a1P39061 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col18a1P39061 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col18a1P39061 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col18a1P39061 Gm13233-201ENSMUST00000118760 1443 ntBASIC20.76■□□□□ 0.91
Col18a1P39061 Gm13244-201ENSMUST00000118855 1446 ntBASIC20.76■□□□□ 0.91
Col18a1P39061 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col18a1P39061 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC20.76■□□□□ 0.91
Col18a1P39061 Mir6420-201ENSMUST00000185032 102 ntBASIC20.76■□□□□ 0.91
Col18a1P39061 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col18a1P39061 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col18a1P39061 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col18a1P39061 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col18a1P39061 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Col18a1P39061 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col18a1P39061 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col18a1P39061 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col18a1P39061 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC20.75■□□□□ 0.91
Col18a1P39061 Gm14026-201ENSMUST00000120625 1789 ntBASIC20.75■□□□□ 0.91
Col18a1P39061 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
Col18a1P39061 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col18a1P39061 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col18a1P39061 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC20.75■□□□□ 0.91
Col18a1P39061 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col18a1P39061 Gm7669-201ENSMUST00000210184 1603 ntBASIC20.75■□□□□ 0.91
Col18a1P39061 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col18a1P39061 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col18a1P39061 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC20.75■□□□□ 0.91
Col18a1P39061 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Col18a1P39061 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC20.75■□□□□ 0.91
Col18a1P39061 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col18a1P39061 Gm13829-201ENSMUST00000119600 138 ntBASIC20.74■□□□□ 0.91
Col18a1P39061 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Col18a1P39061 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC20.74■□□□□ 0.91
Col18a1P39061 AY702102-202ENSMUST00000194651 1173 ntBASIC20.74■□□□□ 0.91
Col18a1P39061 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col18a1P39061 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col18a1P39061 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col18a1P39061 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col18a1P39061 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col18a1P39061 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col18a1P39061 Gm5898-201ENSMUST00000121016 2071 ntBASIC20.74■□□□□ 0.91
Col18a1P39061 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col18a1P39061 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC20.74■□□□□ 0.91
Col18a1P39061 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC20.74■□□□□ 0.91
Col18a1P39061 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
Col18a1P39061 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
Col18a1P39061 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
Col18a1P39061 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col18a1P39061 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC20.74■□□□□ 0.91
Col18a1P39061 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC20.74■□□□□ 0.91
Col18a1P39061 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC20.74■□□□□ 0.91
Col18a1P39061 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col18a1P39061 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col18a1P39061 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col18a1P39061 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC20.73■□□□□ 0.91
Col18a1P39061 Gm15653-201ENSMUST00000119247 907 ntBASIC20.73■□□□□ 0.91
Col18a1P39061 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col18a1P39061 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC20.73■□□□□ 0.91
Col18a1P39061 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col18a1P39061 Gm6266-201ENSMUST00000203844 806 ntBASIC20.73■□□□□ 0.91
Col18a1P39061 Gm9908-201ENSMUST00000211534 448 ntBASIC20.73■□□□□ 0.91
Col18a1P39061 AC238811.1-201ENSMUST00000225302 441 ntBASIC20.73■□□□□ 0.91
Col18a1P39061 AC155729.1-201ENSMUST00000227758 544 ntBASIC20.73■□□□□ 0.91
Col18a1P39061 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC20.73■□□□□ 0.91
Col18a1P39061 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col18a1P39061 Gm4204-201ENSMUST00000110798 1231 ntBASIC20.72■□□□□ 0.91
Col18a1P39061 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC20.72■□□□□ 0.91
Col18a1P39061 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC20.72■□□□□ 0.91
Col18a1P39061 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Col18a1P39061 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Col18a1P39061 AC158529.1-201ENSMUST00000223618 239 ntBASIC20.72■□□□□ 0.91
Col18a1P39061 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC20.72■□□□□ 0.91
Col18a1P39061 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col18a1P39061 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col18a1P39061 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col18a1P39061 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Col18a1P39061 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col18a1P39061 Gm45293-201ENSMUST00000209754 1812 ntBASIC20.72■□□□□ 0.91
Col18a1P39061 Ldb3-207ENSMUST00000227819 1499 ntBASIC20.72■□□□□ 0.91
Col18a1P39061 Gm13337-201ENSMUST00000119183 1594 ntBASIC20.72■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms