Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chmp6P0C0A3 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC17.15■□□□□ 0.34
Chmp6P0C0A3 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Chmp6P0C0A3 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Chmp6P0C0A3 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chmp6P0C0A3 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chmp6P0C0A3 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chmp6P0C0A3 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chmp6P0C0A3 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Chmp6P0C0A3 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chmp6P0C0A3 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chmp6P0C0A3 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 AC132265.1-201ENSMUST00000219233 1665 ntBASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC17.14■□□□□ 0.33
Chmp6P0C0A3 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Cmtm5-203ENSMUST00000227441 610 ntBASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC17.14■□□□□ 0.33
Chmp6P0C0A3 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Gm7507-201ENSMUST00000183053 1008 ntBASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Gm17971-201ENSMUST00000190239 806 ntBASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 AC153526.5-201ENSMUST00000218661 2147 ntBASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
Chmp6P0C0A3 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Gm15165-201ENSMUST00000118140 502 ntBASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chmp6P0C0A3 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC17.11■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms