Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Chd3B1AR17 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Chd3B1AR17 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Chd3B1AR17 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Chd3B1AR17 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Chd3B1AR17 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Chd3B1AR17 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
Chd3B1AR17 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC15.39■□□□□ 0.05
Chd3B1AR17 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC15.39■□□□□ 0.05
Chd3B1AR17 Gm19164-201ENSMUST00000210667 640 ntBASIC15.39■□□□□ 0.05
Chd3B1AR17 Gm18622-201ENSMUST00000219361 595 ntBASIC15.39■□□□□ 0.05
Chd3B1AR17 AC158538.2-201ENSMUST00000225455 906 ntBASIC15.39■□□□□ 0.05
Chd3B1AR17 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Chd3B1AR17 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Chd3B1AR17 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Chd3B1AR17 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Chd3B1AR17 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Chd3B1AR17 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
Chd3B1AR17 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Chd3B1AR17 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Chd3B1AR17 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Chd3B1AR17 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Chd3B1AR17 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Chd3B1AR17 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Chd3B1AR17 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC15.39■□□□□ 0.05
Chd3B1AR17 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC15.39■□□□□ 0.05
Chd3B1AR17 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Chd3B1AR17 Gm9682-201ENSMUST00000197505 556 ntBASIC15.39■□□□□ 0.05
Chd3B1AR17 Gm7229-201ENSMUST00000214719 1007 ntBASIC15.39■□□□□ 0.05
Chd3B1AR17 Gm18246-201ENSMUST00000221023 728 ntBASIC15.39■□□□□ 0.05
Chd3B1AR17 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Chd3B1AR17 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Chd3B1AR17 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Chd3B1AR17 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
Chd3B1AR17 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Chd3B1AR17 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC15.38■□□□□ 0.05
Chd3B1AR17 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC15.38■□□□□ 0.05
Chd3B1AR17 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Chd3B1AR17 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Chd3B1AR17 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Chd3B1AR17 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC15.38■□□□□ 0.05
Chd3B1AR17 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Chd3B1AR17 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Chd3B1AR17 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Chd3B1AR17 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Chd3B1AR17 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
Chd3B1AR17 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Chd3B1AR17 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Chd3B1AR17 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Chd3B1AR17 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Chd3B1AR17 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Chd3B1AR17 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Chd3B1AR17 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Chd3B1AR17 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
Chd3B1AR17 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Chd3B1AR17 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Chd3B1AR17 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Chd3B1AR17 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC15.37■□□□□ 0.05
Chd3B1AR17 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Chd3B1AR17 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC15.37■□□□□ 0.05
Chd3B1AR17 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Chd3B1AR17 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Chd3B1AR17 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Chd3B1AR17 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Chd3B1AR17 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Chd3B1AR17 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Chd3B1AR17 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Chd3B1AR17 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Chd3B1AR17 App-207ENSMUST00000227737 2827 ntBASIC15.37■□□□□ 0.05
Chd3B1AR17 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC15.37■□□□□ 0.05
Chd3B1AR17 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Chd3B1AR17 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC15.37■□□□□ 0.05
Chd3B1AR17 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC15.37■□□□□ 0.05
Chd3B1AR17 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC15.37■□□□□ 0.05
Chd3B1AR17 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Chd3B1AR17 AC119177.1-201ENSMUST00000227647 1332 ntBASIC15.37■□□□□ 0.05
Chd3B1AR17 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Chd3B1AR17 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Chd3B1AR17 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Chd3B1AR17 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC15.37■□□□□ 0.05
Chd3B1AR17 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC15.37■□□□□ 0.05
Chd3B1AR17 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Chd3B1AR17 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
Chd3B1AR17 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
Chd3B1AR17 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
Chd3B1AR17 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC15.36■□□□□ 0.05
Chd3B1AR17 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
Chd3B1AR17 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC15.36■□□□□ 0.05
Chd3B1AR17 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC15.36■□□□□ 0.05
Chd3B1AR17 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Chd3B1AR17 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 10.2 ms