Protein–RNA interactions for Protein: Q9D6Z1

Nop56, Nucleolar protein 56, mousemouse

Known RBP Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nop56Q9D6Z1 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Nop56Q9D6Z1 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Nop56Q9D6Z1 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Gm44450-201ENSMUST00000199528 114 ntBASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Gm3375-201ENSMUST00000203929 796 ntBASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 AC163637.1-201ENSMUST00000215491 1894 ntBASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Rbfox2-206ENSMUST00000227314 1810 ntBASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Nop56Q9D6Z1 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Gm11539-201ENSMUST00000119837 557 ntBASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Gm18421-201ENSMUST00000204122 625 ntBASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nop56Q9D6Z1 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Arhgef4-208ENSMUST00000211073 171 ntBASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 AC153881.1-201ENSMUST00000214448 284 ntBASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 AC154649.1-201ENSMUST00000227392 384 ntBASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nop56Q9D6Z1 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nop56Q9D6Z1 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nop56Q9D6Z1 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nop56Q9D6Z1 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nop56Q9D6Z1 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Nop56Q9D6Z1 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nop56Q9D6Z1 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nop56Q9D6Z1 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nop56Q9D6Z1 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
Nop56Q9D6Z1 Gm29257-201ENSMUST00000186115 639 ntBASIC16.29■□□□□ 0.2
Nop56Q9D6Z1 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nop56Q9D6Z1 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC16.29■□□□□ 0.2
Nop56Q9D6Z1 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nop56Q9D6Z1 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nop56Q9D6Z1 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC16.29■□□□□ 0.2
Nop56Q9D6Z1 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms