Protein–RNA interactions for Protein: P55066

Ncan, Neurocan core protein, mousemouse

Predictions only

Length 1,268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NcanP55066 Gm15487-201ENSMUST00000122373 465 ntBASIC16.55■□□□□ 0.24
NcanP55066 Gm6257-201ENSMUST00000163864 910 ntBASIC16.55■□□□□ 0.24
NcanP55066 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
NcanP55066 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC16.55■□□□□ 0.24
NcanP55066 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
NcanP55066 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NcanP55066 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
NcanP55066 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC16.55■□□□□ 0.24
NcanP55066 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NcanP55066 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NcanP55066 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
NcanP55066 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NcanP55066 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NcanP55066 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC16.54■□□□□ 0.24
NcanP55066 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NcanP55066 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NcanP55066 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
NcanP55066 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NcanP55066 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NcanP55066 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NcanP55066 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC16.54■□□□□ 0.24
NcanP55066 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC16.54■□□□□ 0.24
NcanP55066 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NcanP55066 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC16.54■□□□□ 0.24
NcanP55066 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
NcanP55066 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NcanP55066 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NcanP55066 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC16.54■□□□□ 0.24
NcanP55066 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
NcanP55066 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NcanP55066 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NcanP55066 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC16.53■□□□□ 0.24
NcanP55066 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC16.53■□□□□ 0.24
NcanP55066 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC16.53■□□□□ 0.24
NcanP55066 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
NcanP55066 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NcanP55066 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NcanP55066 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NcanP55066 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC16.53■□□□□ 0.24
NcanP55066 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
NcanP55066 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
NcanP55066 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC16.53■□□□□ 0.24
NcanP55066 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NcanP55066 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NcanP55066 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
NcanP55066 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
NcanP55066 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
NcanP55066 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
NcanP55066 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NcanP55066 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
NcanP55066 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
NcanP55066 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
NcanP55066 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC16.53■□□□□ 0.24
NcanP55066 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
NcanP55066 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
NcanP55066 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NcanP55066 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NcanP55066 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
NcanP55066 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NcanP55066 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
NcanP55066 Gm43182-201ENSMUST00000199476 2528 ntBASIC16.52■□□□□ 0.24
NcanP55066 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NcanP55066 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC16.52■□□□□ 0.24
NcanP55066 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
NcanP55066 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NcanP55066 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
NcanP55066 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC16.52■□□□□ 0.24
NcanP55066 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
NcanP55066 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NcanP55066 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC16.52■□□□□ 0.24
NcanP55066 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NcanP55066 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC16.52■□□□□ 0.24
NcanP55066 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NcanP55066 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NcanP55066 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
NcanP55066 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
NcanP55066 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
NcanP55066 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
NcanP55066 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
NcanP55066 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
NcanP55066 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NcanP55066 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
NcanP55066 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NcanP55066 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NcanP55066 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
NcanP55066 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC16.51■□□□□ 0.23
NcanP55066 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC16.51■□□□□ 0.23
NcanP55066 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
NcanP55066 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NcanP55066 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
NcanP55066 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NcanP55066 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NcanP55066 Gm13517-201ENSMUST00000120782 1495 ntBASIC16.51■□□□□ 0.23
NcanP55066 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
NcanP55066 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
NcanP55066 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
NcanP55066 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC16.51■□□□□ 0.23
NcanP55066 Gm14928-201ENSMUST00000120198 477 ntBASIC16.51■□□□□ 0.23
NcanP55066 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
NcanP55066 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 78.3 ms