Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RaraP11416 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RaraP11416 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RaraP11416 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RaraP11416 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC17.08■□□□□ 0.32
RaraP11416 Gm5587-201ENSMUST00000206270 674 ntBASIC17.08■□□□□ 0.32
RaraP11416 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
RaraP11416 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
RaraP11416 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RaraP11416 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RaraP11416 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
RaraP11416 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
RaraP11416 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RaraP11416 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RaraP11416 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RaraP11416 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC17.08■□□□□ 0.32
RaraP11416 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RaraP11416 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RaraP11416 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
RaraP11416 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RaraP11416 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
RaraP11416 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC17.07■□□□□ 0.32
RaraP11416 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
RaraP11416 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
RaraP11416 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RaraP11416 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RaraP11416 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC17.07■□□□□ 0.32
RaraP11416 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RaraP11416 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RaraP11416 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
RaraP11416 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
RaraP11416 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RaraP11416 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RaraP11416 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RaraP11416 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
RaraP11416 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
RaraP11416 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
RaraP11416 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
RaraP11416 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC17.06■□□□□ 0.32
RaraP11416 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RaraP11416 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC17.06■□□□□ 0.32
RaraP11416 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RaraP11416 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RaraP11416 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RaraP11416 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RaraP11416 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC17.06■□□□□ 0.32
RaraP11416 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RaraP11416 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RaraP11416 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
RaraP11416 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RaraP11416 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC17.06■□□□□ 0.32
RaraP11416 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC17.06■□□□□ 0.32
RaraP11416 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RaraP11416 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RaraP11416 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RaraP11416 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RaraP11416 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RaraP11416 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
RaraP11416 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
RaraP11416 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
RaraP11416 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
RaraP11416 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
RaraP11416 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
RaraP11416 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC17.06■□□□□ 0.32
RaraP11416 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
RaraP11416 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RaraP11416 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RaraP11416 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RaraP11416 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
RaraP11416 Zkscan3-208ENSMUST00000224820 5398 ntBASIC17.06■□□□□ 0.32
RaraP11416 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RaraP11416 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
RaraP11416 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
RaraP11416 Gm8258-201ENSMUST00000055593 1449 ntBASIC17.05■□□□□ 0.32
RaraP11416 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RaraP11416 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC17.05■□□□□ 0.32
RaraP11416 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RaraP11416 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
RaraP11416 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
RaraP11416 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RaraP11416 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RaraP11416 Gm6257-201ENSMUST00000163864 910 ntBASIC17.05■□□□□ 0.32
RaraP11416 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
RaraP11416 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RaraP11416 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC17.05■□□□□ 0.32
RaraP11416 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RaraP11416 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
RaraP11416 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
RaraP11416 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
RaraP11416 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RaraP11416 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RaraP11416 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RaraP11416 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RaraP11416 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RaraP11416 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RaraP11416 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC17.04■□□□□ 0.32
RaraP11416 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RaraP11416 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RaraP11416 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
RaraP11416 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms