Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC15.43■□□□□ 0.06
Chd3B1AR17 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Chd3B1AR17 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Chd3B1AR17 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
Chd3B1AR17 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Chd3B1AR17 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Chd3B1AR17 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC15.42■□□□□ 0.06
Chd3B1AR17 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC15.42■□□□□ 0.06
Chd3B1AR17 Gm7222-201ENSMUST00000117512 906 ntBASIC15.42■□□□□ 0.06
Chd3B1AR17 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Chd3B1AR17 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Chd3B1AR17 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Chd3B1AR17 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Chd3B1AR17 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Chd3B1AR17 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Chd3B1AR17 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Chd3B1AR17 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC15.42■□□□□ 0.06
Chd3B1AR17 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Chd3B1AR17 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Chd3B1AR17 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Chd3B1AR17 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Chd3B1AR17 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Chd3B1AR17 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Chd3B1AR17 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC15.42■□□□□ 0.06
Chd3B1AR17 Gm11594-201ENSMUST00000122313 162 ntBASIC15.42■□□□□ 0.06
Chd3B1AR17 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC15.42■□□□□ 0.06
Chd3B1AR17 Gm7063-201ENSMUST00000186840 981 ntBASIC15.42■□□□□ 0.06
Chd3B1AR17 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC15.42■□□□□ 0.06
Chd3B1AR17 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
Chd3B1AR17 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Chd3B1AR17 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Chd3B1AR17 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Chd3B1AR17 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Chd3B1AR17 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC15.41■□□□□ 0.06
Chd3B1AR17 Gm44729-201ENSMUST00000206759 2052 ntBASIC15.41■□□□□ 0.06
Chd3B1AR17 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Chd3B1AR17 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC15.41■□□□□ 0.06
Chd3B1AR17 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC15.41■□□□□ 0.06
Chd3B1AR17 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC15.41■□□□□ 0.06
Chd3B1AR17 AC127302.2-201ENSMUST00000215212 268 ntBASIC15.41■□□□□ 0.06
Chd3B1AR17 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Chd3B1AR17 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC15.41■□□□□ 0.06
Chd3B1AR17 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC15.41■□□□□ 0.06
Chd3B1AR17 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC15.41■□□□□ 0.06
Chd3B1AR17 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 Best4-ps-201ENSMUST00000129783 1380 ntBASIC15.41■□□□□ 0.06
Chd3B1AR17 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Chd3B1AR17 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Chd3B1AR17 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC15.4■□□□□ 0.06
Chd3B1AR17 Gm25911-201ENSMUST00000157621 56 ntBASIC15.4■□□□□ 0.06
Chd3B1AR17 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Chd3B1AR17 Gm7286-201ENSMUST00000182691 1007 ntBASIC15.4■□□□□ 0.06
Chd3B1AR17 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC15.4■□□□□ 0.06
Chd3B1AR17 Gm44945-201ENSMUST00000206764 1187 ntBASIC15.4■□□□□ 0.06
Chd3B1AR17 Bloc1s5-203ENSMUST00000224902 612 ntBASIC15.4■□□□□ 0.06
Chd3B1AR17 AC154572.2-201ENSMUST00000225105 997 ntBASIC15.4■□□□□ 0.06
Chd3B1AR17 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Chd3B1AR17 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Chd3B1AR17 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Chd3B1AR17 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Chd3B1AR17 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC15.4■□□□□ 0.06
Chd3B1AR17 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Chd3B1AR17 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Chd3B1AR17 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Chd3B1AR17 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Chd3B1AR17 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Chd3B1AR17 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Chd3B1AR17 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Chd3B1AR17 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 11.7 ms