Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Gm27357-201ENSMUST00000183754 135 ntBASIC14.95□□□□□ -0.02
Clrn1Q8K445 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC14.95□□□□□ -0.02
Clrn1Q8K445 Gm44454-201ENSMUST00000198541 138 ntBASIC14.95□□□□□ -0.02
Clrn1Q8K445 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Clrn1Q8K445 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC14.95□□□□□ -0.02
Clrn1Q8K445 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC14.95□□□□□ -0.02
Clrn1Q8K445 AC130671.1-201ENSMUST00000227384 1237 ntBASIC14.95□□□□□ -0.02
Clrn1Q8K445 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Clrn1Q8K445 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Clrn1Q8K445 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Clrn1Q8K445 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Clrn1Q8K445 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Clrn1Q8K445 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
Clrn1Q8K445 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Clrn1Q8K445 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Clrn1Q8K445 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Clrn1Q8K445 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Clrn1Q8K445 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Clrn1Q8K445 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC14.94□□□□□ -0.02
Clrn1Q8K445 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clrn1Q8K445 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Clrn1Q8K445 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clrn1Q8K445 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clrn1Q8K445 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Clrn1Q8K445 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC14.92□□□□□ -0.02
Clrn1Q8K445 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
Clrn1Q8K445 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Clrn1Q8K445 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Clrn1Q8K445 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Clrn1Q8K445 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC14.92□□□□□ -0.02
Clrn1Q8K445 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC14.92□□□□□ -0.02
Clrn1Q8K445 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Clrn1Q8K445 AC124569.2-201ENSMUST00000225998 818 ntBASIC14.92□□□□□ -0.02
Clrn1Q8K445 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC14.92□□□□□ -0.02
Clrn1Q8K445 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Clrn1Q8K445 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
Clrn1Q8K445 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Clrn1Q8K445 Gm44729-201ENSMUST00000206759 2052 ntBASIC14.92□□□□□ -0.02
Clrn1Q8K445 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Clrn1Q8K445 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Clrn1Q8K445 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Clrn1Q8K445 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Clrn1Q8K445 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Clrn1Q8K445 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Clrn1Q8K445 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Clrn1Q8K445 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms