Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28bQ8CEG5 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28bQ8CEG5 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28bQ8CEG5 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28bQ8CEG5 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28bQ8CEG5 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Ccdc28bQ8CEG5 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28bQ8CEG5 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28bQ8CEG5 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28bQ8CEG5 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC15.66■□□□□ 0.1
Ccdc28bQ8CEG5 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28bQ8CEG5 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28bQ8CEG5 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC15.66■□□□□ 0.1
Ccdc28bQ8CEG5 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28bQ8CEG5 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28bQ8CEG5 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Gm44291-201ENSMUST00000203102 2865 ntBASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Gm3375-201ENSMUST00000203929 796 ntBASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ccdc28bQ8CEG5 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
Ccdc28bQ8CEG5 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
Ccdc28bQ8CEG5 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 Gm38327-201ENSMUST00000195852 1755 ntBASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ccdc28bQ8CEG5 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ccdc28bQ8CEG5 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Ccdc28bQ8CEG5 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ccdc28bQ8CEG5 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ccdc28bQ8CEG5 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC15.63■□□□□ 0.09
Ccdc28bQ8CEG5 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ccdc28bQ8CEG5 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Ccdc28bQ8CEG5 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC15.63■□□□□ 0.09
Ccdc28bQ8CEG5 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ccdc28bQ8CEG5 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ccdc28bQ8CEG5 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Ccdc28bQ8CEG5 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Ccdc28bQ8CEG5 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ccdc28bQ8CEG5 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ccdc28bQ8CEG5 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC15.63■□□□□ 0.09
Ccdc28bQ8CEG5 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Ccdc28bQ8CEG5 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ccdc28bQ8CEG5 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ccdc28bQ8CEG5 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Ccdc28bQ8CEG5 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Ccdc28bQ8CEG5 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ccdc28bQ8CEG5 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ccdc28bQ8CEG5 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ccdc28bQ8CEG5 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ccdc28bQ8CEG5 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ccdc28bQ8CEG5 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ccdc28bQ8CEG5 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Ccdc28bQ8CEG5 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC15.62■□□□□ 0.09
Ccdc28bQ8CEG5 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Ccdc28bQ8CEG5 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ccdc28bQ8CEG5 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ccdc28bQ8CEG5 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ccdc28bQ8CEG5 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ccdc28bQ8CEG5 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms