Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim56Q80VI1 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
Trim56Q80VI1 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
Trim56Q80VI1 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim56Q80VI1 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim56Q80VI1 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim56Q80VI1 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC18.64■□□□□ 0.57
Trim56Q80VI1 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim56Q80VI1 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
Trim56Q80VI1 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim56Q80VI1 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC18.64■□□□□ 0.57
Trim56Q80VI1 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Trim56Q80VI1 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC18.64■□□□□ 0.57
Trim56Q80VI1 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim56Q80VI1 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Trim56Q80VI1 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim56Q80VI1 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim56Q80VI1 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim56Q80VI1 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim56Q80VI1 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trim56Q80VI1 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC18.64■□□□□ 0.57
Trim56Q80VI1 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim56Q80VI1 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim56Q80VI1 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim56Q80VI1 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC18.64■□□□□ 0.57
Trim56Q80VI1 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim56Q80VI1 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
Trim56Q80VI1 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim56Q80VI1 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim56Q80VI1 Gm15173-201ENSMUST00000122049 433 ntBASIC18.63■□□□□ 0.57
Trim56Q80VI1 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Trim56Q80VI1 Gm7230-201ENSMUST00000173026 815 ntBASIC18.63■□□□□ 0.57
Trim56Q80VI1 Mir5131-201ENSMUST00000175426 93 ntBASIC18.63■□□□□ 0.57
Trim56Q80VI1 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim56Q80VI1 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC18.63■□□□□ 0.57
Trim56Q80VI1 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trim56Q80VI1 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim56Q80VI1 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trim56Q80VI1 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim56Q80VI1 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim56Q80VI1 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trim56Q80VI1 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
Trim56Q80VI1 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim56Q80VI1 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trim56Q80VI1 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
Trim56Q80VI1 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trim56Q80VI1 AC127302.2-201ENSMUST00000215212 268 ntBASIC18.62■□□□□ 0.57
Trim56Q80VI1 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim56Q80VI1 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim56Q80VI1 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trim56Q80VI1 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim56Q80VI1 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim56Q80VI1 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim56Q80VI1 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trim56Q80VI1 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim56Q80VI1 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC18.61■□□□□ 0.57
Trim56Q80VI1 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim56Q80VI1 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim56Q80VI1 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim56Q80VI1 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim56Q80VI1 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim56Q80VI1 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC18.61■□□□□ 0.57
Trim56Q80VI1 Gm9449-201ENSMUST00000207265 1011 ntBASIC18.61■□□□□ 0.57
Trim56Q80VI1 AC154757.1-201ENSMUST00000228289 336 ntBASIC18.61■□□□□ 0.57
Trim56Q80VI1 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim56Q80VI1 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim56Q80VI1 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim56Q80VI1 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
Trim56Q80VI1 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim56Q80VI1 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Trim56Q80VI1 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim56Q80VI1 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim56Q80VI1 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim56Q80VI1 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim56Q80VI1 Gm8344-201ENSMUST00000119813 856 ntBASIC18.6■□□□□ 0.57
Trim56Q80VI1 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim56Q80VI1 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC18.6■□□□□ 0.57
Trim56Q80VI1 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim56Q80VI1 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trim56Q80VI1 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trim56Q80VI1 AC093926.2-201ENSMUST00000214468 1228 ntBASIC18.6■□□□□ 0.57
Trim56Q80VI1 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC18.6■□□□□ 0.57
Trim56Q80VI1 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC18.6■□□□□ 0.57
Trim56Q80VI1 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim56Q80VI1 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim56Q80VI1 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC18.6■□□□□ 0.57
Trim56Q80VI1 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim56Q80VI1 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim56Q80VI1 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim56Q80VI1 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim56Q80VI1 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim56Q80VI1 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Trim56Q80VI1 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC18.6■□□□□ 0.57
Trim56Q80VI1 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC18.59■□□□□ 0.57
Trim56Q80VI1 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim56Q80VI1 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim56Q80VI1 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trim56Q80VI1 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC18.59■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms