Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Nrn1-203ENSMUST00000223611 1443 ntBASIC15.06■□□□□ 0
Rnf220Q6PDX6 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Rnf220Q6PDX6 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC15.06■□□□□ 0
Rnf220Q6PDX6 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC15.06■□□□□ 0
Rnf220Q6PDX6 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Rnf220Q6PDX6 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC15.06■□□□□ 0
Rnf220Q6PDX6 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC15.06■□□□□ 0
Rnf220Q6PDX6 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
Rnf220Q6PDX6 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Rnf220Q6PDX6 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Rnf220Q6PDX6 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Rnf220Q6PDX6 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Rnf220Q6PDX6 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Rnf220Q6PDX6 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Rnf220Q6PDX6 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
Rnf220Q6PDX6 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Rnf220Q6PDX6 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Rnf220Q6PDX6 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Rnf220Q6PDX6 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC15.05■□□□□ -0
Rnf220Q6PDX6 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC15.05■□□□□ -0
Rnf220Q6PDX6 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC15.05■□□□□ -0
Rnf220Q6PDX6 Gm37856-201ENSMUST00000191634 999 ntBASIC15.05■□□□□ -0
Rnf220Q6PDX6 Trmt13-210ENSMUST00000198454 880 ntBASIC15.05■□□□□ -0
Rnf220Q6PDX6 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC15.05■□□□□ -0
Rnf220Q6PDX6 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Rnf220Q6PDX6 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
Rnf220Q6PDX6 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC15.05■□□□□ -0
Rnf220Q6PDX6 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC15.05■□□□□ -0
Rnf220Q6PDX6 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC15.05■□□□□ -0
Rnf220Q6PDX6 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC15.05■□□□□ -0
Rnf220Q6PDX6 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Rnf220Q6PDX6 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Rnf220Q6PDX6 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Rnf220Q6PDX6 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Rnf220Q6PDX6 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Rnf220Q6PDX6 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Rnf220Q6PDX6 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Rnf220Q6PDX6 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC15.04■□□□□ -0
Rnf220Q6PDX6 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Rnf220Q6PDX6 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC15.03■□□□□ -0
Rnf220Q6PDX6 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Gm43183-201ENSMUST00000200632 547 ntBASIC15.03■□□□□ -0
Rnf220Q6PDX6 Slc35b2-207ENSMUST00000226086 850 ntBASIC15.03■□□□□ -0
Rnf220Q6PDX6 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rnf220Q6PDX6 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC15.03■□□□□ -0
Rnf220Q6PDX6 Gm44729-201ENSMUST00000206759 2052 ntBASIC15.02■□□□□ -0
Rnf220Q6PDX6 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC15.02■□□□□ -0
Rnf220Q6PDX6 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC15.02■□□□□ -0
Rnf220Q6PDX6 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Rnf220Q6PDX6 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Rnf220Q6PDX6 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms