Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Gm10355-201ENSMUST00000097146 517 ntBASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb4Q6P8W9 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Gm25990-201ENSMUST00000102440 86 ntBASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Gm5364-201ENSMUST00000216789 889 ntBASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb4Q6P8W9 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb4Q6P8W9 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Hmgb4Q6P8W9 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Hmgb4Q6P8W9 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC16.53■□□□□ 0.24
Hmgb4Q6P8W9 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC16.53■□□□□ 0.24
Hmgb4Q6P8W9 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb4Q6P8W9 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC16.53■□□□□ 0.24
Hmgb4Q6P8W9 Gm11594-201ENSMUST00000122313 162 ntBASIC16.53■□□□□ 0.24
Hmgb4Q6P8W9 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb4Q6P8W9 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb4Q6P8W9 Mir5126-201ENSMUST00000175513 77 ntBASIC16.53■□□□□ 0.24
Hmgb4Q6P8W9 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC16.53■□□□□ 0.24
Hmgb4Q6P8W9 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC16.53■□□□□ 0.24
Hmgb4Q6P8W9 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb4Q6P8W9 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Hmgb4Q6P8W9 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb4Q6P8W9 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb4Q6P8W9 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb4Q6P8W9 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb4Q6P8W9 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb4Q6P8W9 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Hmgb4Q6P8W9 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Hmgb4Q6P8W9 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Hmgb4Q6P8W9 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Hmgb4Q6P8W9 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Hmgb4Q6P8W9 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms