Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim28Q62318 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
Trim28Q62318 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim28Q62318 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim28Q62318 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC20.48■□□□□ 0.87
Trim28Q62318 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC20.48■□□□□ 0.87
Trim28Q62318 AC225888.1-201ENSMUST00000227184 728 ntBASIC20.48■□□□□ 0.87
Trim28Q62318 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim28Q62318 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trim28Q62318 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim28Q62318 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trim28Q62318 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trim28Q62318 Gm20628-201ENSMUST00000177363 3215 ntBASIC20.48■□□□□ 0.87
Trim28Q62318 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim28Q62318 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Trim28Q62318 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim28Q62318 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim28Q62318 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim28Q62318 Gm23935-201ENSMUST00000102303 57 ntBASIC20.47■□□□□ 0.87
Trim28Q62318 Gm24270-201ENSMUST00000102326 57 ntBASIC20.47■□□□□ 0.87
Trim28Q62318 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Trim28Q62318 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
Trim28Q62318 Gm24245-201ENSMUST00000157318 57 ntBASIC20.47■□□□□ 0.87
Trim28Q62318 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC20.47■□□□□ 0.87
Trim28Q62318 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim28Q62318 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim28Q62318 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim28Q62318 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim28Q62318 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim28Q62318 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim28Q62318 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim28Q62318 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim28Q62318 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim28Q62318 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim28Q62318 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trim28Q62318 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim28Q62318 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim28Q62318 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim28Q62318 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trim28Q62318 Gm2756-201ENSMUST00000195851 400 ntBASIC20.46■□□□□ 0.87
Trim28Q62318 Gm43575-201ENSMUST00000196420 516 ntBASIC20.46■□□□□ 0.87
Trim28Q62318 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim28Q62318 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim28Q62318 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim28Q62318 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim28Q62318 AC153526.5-201ENSMUST00000218661 2147 ntBASIC20.45■□□□□ 0.86
Trim28Q62318 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Trim28Q62318 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Trim28Q62318 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim28Q62318 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim28Q62318 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim28Q62318 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC20.45■□□□□ 0.86
Trim28Q62318 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC20.45■□□□□ 0.86
Trim28Q62318 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC20.45■□□□□ 0.86
Trim28Q62318 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC20.45■□□□□ 0.86
Trim28Q62318 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim28Q62318 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC20.45■□□□□ 0.86
Trim28Q62318 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC20.45■□□□□ 0.86
Trim28Q62318 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC20.45■□□□□ 0.86
Trim28Q62318 Gm2213-201ENSMUST00000197485 688 ntBASIC20.45■□□□□ 0.86
Trim28Q62318 AC154572.2-201ENSMUST00000225105 997 ntBASIC20.45■□□□□ 0.86
Trim28Q62318 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim28Q62318 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC20.45■□□□□ 0.86
Trim28Q62318 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Trim28Q62318 AC157650.3-201ENSMUST00000225058 1476 ntBASIC20.44■□□□□ 0.86
Trim28Q62318 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim28Q62318 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim28Q62318 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trim28Q62318 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
Trim28Q62318 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim28Q62318 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC20.44■□□□□ 0.86
Trim28Q62318 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC20.44■□□□□ 0.86
Trim28Q62318 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trim28Q62318 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trim28Q62318 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
Trim28Q62318 Gm45747-201ENSMUST00000212203 999 ntBASIC20.44■□□□□ 0.86
Trim28Q62318 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim28Q62318 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim28Q62318 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim28Q62318 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trim28Q62318 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
Trim28Q62318 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim28Q62318 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim28Q62318 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim28Q62318 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim28Q62318 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim28Q62318 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Trim28Q62318 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim28Q62318 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim28Q62318 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC20.43■□□□□ 0.86
Trim28Q62318 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim28Q62318 Gm24513-201ENSMUST00000174964 138 ntBASIC20.43■□□□□ 0.86
Trim28Q62318 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Trim28Q62318 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Trim28Q62318 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim28Q62318 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC20.43■□□□□ 0.86
Trim28Q62318 Gm15500-202ENSMUST00000071641 1019 ntBASIC20.43■□□□□ 0.86
Trim28Q62318 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim28Q62318 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC20.43■□□□□ 0.86
Trim28Q62318 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms