Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC16.71■□□□□ 0.26
Shmt1P50431 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.26
Shmt1P50431 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
Shmt1P50431 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
Shmt1P50431 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC16.7■□□□□ 0.26
Shmt1P50431 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shmt1P50431 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shmt1P50431 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shmt1P50431 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC16.7■□□□□ 0.26
Shmt1P50431 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shmt1P50431 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shmt1P50431 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Shmt1P50431 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shmt1P50431 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Shmt1P50431 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shmt1P50431 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shmt1P50431 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shmt1P50431 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shmt1P50431 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shmt1P50431 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Shmt1P50431 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Shmt1P50431 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shmt1P50431 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shmt1P50431 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shmt1P50431 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shmt1P50431 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
Shmt1P50431 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shmt1P50431 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC16.7■□□□□ 0.26
Shmt1P50431 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Shmt1P50431 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shmt1P50431 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC16.69■□□□□ 0.26
Shmt1P50431 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC16.69■□□□□ 0.26
Shmt1P50431 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC16.69■□□□□ 0.26
Shmt1P50431 Mir5131-201ENSMUST00000175426 93 ntBASIC16.69■□□□□ 0.26
Shmt1P50431 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC16.69■□□□□ 0.26
Shmt1P50431 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC16.69■□□□□ 0.26
Shmt1P50431 Gm27646-201ENSMUST00000183989 110 ntBASIC16.69■□□□□ 0.26
Shmt1P50431 Gm2651-201ENSMUST00000203560 838 ntBASIC16.69■□□□□ 0.26
Shmt1P50431 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Shmt1P50431 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC16.69■□□□□ 0.26
Shmt1P50431 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Shmt1P50431 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Shmt1P50431 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shmt1P50431 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Shmt1P50431 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC16.68■□□□□ 0.26
Shmt1P50431 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Shmt1P50431 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC16.68■□□□□ 0.26
Shmt1P50431 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shmt1P50431 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Shmt1P50431 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shmt1P50431 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shmt1P50431 Gm15173-201ENSMUST00000122049 433 ntBASIC16.68■□□□□ 0.26
Shmt1P50431 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC16.68■□□□□ 0.26
Shmt1P50431 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Shmt1P50431 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shmt1P50431 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC16.68■□□□□ 0.26
Shmt1P50431 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Shmt1P50431 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shmt1P50431 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Shmt1P50431 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC16.68■□□□□ 0.26
Shmt1P50431 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shmt1P50431 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC16.68■□□□□ 0.26
Shmt1P50431 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC16.68■□□□□ 0.26
Shmt1P50431 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
Shmt1P50431 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shmt1P50431 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shmt1P50431 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shmt1P50431 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shmt1P50431 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shmt1P50431 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shmt1P50431 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Shmt1P50431 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shmt1P50431 AC153526.5-201ENSMUST00000218661 2147 ntBASIC16.67■□□□□ 0.26
Shmt1P50431 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Shmt1P50431 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shmt1P50431 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shmt1P50431 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms