Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col1a1P11087 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col1a1P11087 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col1a1P11087 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col1a1P11087 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC18.39■□□□□ 0.53
Col1a1P11087 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC18.39■□□□□ 0.53
Col1a1P11087 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Col1a1P11087 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col1a1P11087 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Col1a1P11087 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Col1a1P11087 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col1a1P11087 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Col1a1P11087 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col1a1P11087 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col1a1P11087 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Col1a1P11087 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC18.38■□□□□ 0.53
Col1a1P11087 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col1a1P11087 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col1a1P11087 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC18.38■□□□□ 0.53
Col1a1P11087 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col1a1P11087 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Col1a1P11087 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Col1a1P11087 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC18.38■□□□□ 0.53
Col1a1P11087 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC18.38■□□□□ 0.53
Col1a1P11087 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Col1a1P11087 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Col1a1P11087 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC18.38■□□□□ 0.53
Col1a1P11087 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC18.38■□□□□ 0.53
Col1a1P11087 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col1a1P11087 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Col1a1P11087 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col1a1P11087 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col1a1P11087 AC121598.2-201ENSMUST00000228376 2325 ntBASIC18.37■□□□□ 0.53
Col1a1P11087 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col1a1P11087 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col1a1P11087 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col1a1P11087 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col1a1P11087 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col1a1P11087 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col1a1P11087 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Col1a1P11087 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Col1a1P11087 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col1a1P11087 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col1a1P11087 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col1a1P11087 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC18.37■□□□□ 0.53
Col1a1P11087 Gm27437-201ENSMUST00000183429 107 ntBASIC18.37■□□□□ 0.53
Col1a1P11087 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC18.37■□□□□ 0.53
Col1a1P11087 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC18.37■□□□□ 0.53
Col1a1P11087 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col1a1P11087 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col1a1P11087 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col1a1P11087 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col1a1P11087 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Col1a1P11087 AC140375.2-201ENSMUST00000225283 584 ntBASIC18.37■□□□□ 0.53
Col1a1P11087 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col1a1P11087 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Col1a1P11087 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
Col1a1P11087 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
Col1a1P11087 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col1a1P11087 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC18.37■□□□□ 0.53
Col1a1P11087 Gm6018-201ENSMUST00000216090 1306 ntBASIC18.37■□□□□ 0.53
Col1a1P11087 AC159621.2-201ENSMUST00000223519 1326 ntBASIC18.37■□□□□ 0.53
Col1a1P11087 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col1a1P11087 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col1a1P11087 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col1a1P11087 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC18.36■□□□□ 0.53
Col1a1P11087 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col1a1P11087 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Col1a1P11087 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col1a1P11087 Gm12017-201ENSMUST00000122453 1003 ntBASIC18.36■□□□□ 0.53
Col1a1P11087 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col1a1P11087 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col1a1P11087 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC18.36■□□□□ 0.53
Col1a1P11087 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col1a1P11087 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC18.36■□□□□ 0.53
Col1a1P11087 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC18.36■□□□□ 0.53
Col1a1P11087 Gm8318-201ENSMUST00000182954 872 ntBASIC18.36■□□□□ 0.53
Col1a1P11087 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC18.36■□□□□ 0.53
Col1a1P11087 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col1a1P11087 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC18.36■□□□□ 0.53
Col1a1P11087 CT030684.1-201ENSMUST00000227292 914 ntBASIC18.36■□□□□ 0.53
Col1a1P11087 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Col1a1P11087 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col1a1P11087 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC18.36■□□□□ 0.53
Col1a1P11087 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col1a1P11087 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col1a1P11087 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC18.36■□□□□ 0.53
Col1a1P11087 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col1a1P11087 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col1a1P11087 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col1a1P11087 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col1a1P11087 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col1a1P11087 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col1a1P11087 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col1a1P11087 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col1a1P11087 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col1a1P11087 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col1a1P11087 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col1a1P11087 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col1a1P11087 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms