Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Smco4Q9JIS3 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Smco4Q9JIS3 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Smco4Q9JIS3 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Smco4Q9JIS3 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Smco4Q9JIS3 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Smco4Q9JIS3 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Smco4Q9JIS3 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Smco4Q9JIS3 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Smco4Q9JIS3 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Smco4Q9JIS3 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Smco4Q9JIS3 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Smco4Q9JIS3 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Smco4Q9JIS3 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC12.81□□□□□ -0.36
Smco4Q9JIS3 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Smco4Q9JIS3 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Gm8493-201ENSMUST00000196881 489 ntBASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Gm40848-201ENSMUST00000221998 324 ntBASIC12.8□□□□□ -0.36
Smco4Q9JIS3 AC093043.1-201ENSMUST00000226700 898 ntBASIC12.8□□□□□ -0.36
Smco4Q9JIS3 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Gm12620-201ENSMUST00000119791 1986 ntBASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Gm12612-201ENSMUST00000140182 1986 ntBASIC12.8□□□□□ -0.36
Smco4Q9JIS3 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Smco4Q9JIS3 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Smco4Q9JIS3 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Smco4Q9JIS3 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Smco4Q9JIS3 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC12.78□□□□□ -0.36
Smco4Q9JIS3 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Smco4Q9JIS3 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC12.78□□□□□ -0.36
Smco4Q9JIS3 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
Smco4Q9JIS3 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Smco4Q9JIS3 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC12.78□□□□□ -0.36
Smco4Q9JIS3 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Smco4Q9JIS3 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Smco4Q9JIS3 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Smco4Q9JIS3 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Smco4Q9JIS3 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Smco4Q9JIS3 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Smco4Q9JIS3 Ksr1-207ENSMUST00000226282 5260 ntBASIC12.78□□□□□ -0.36
Smco4Q9JIS3 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Smco4Q9JIS3 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC12.78□□□□□ -0.36
Smco4Q9JIS3 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Smco4Q9JIS3 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Smco4Q9JIS3 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms