Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Gm45058-201ENSMUST00000205810 766 ntBASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Gm14026-201ENSMUST00000120625 1789 ntBASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Phf7-203ENSMUST00000226565 1971 ntBASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Gm6433-201ENSMUST00000118634 875 ntBASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Gm18959-201ENSMUST00000208954 655 ntBASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
Lima1Q9ERG0 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Gm3272-201ENSMUST00000181181 1229 ntBASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Mir1668-201ENSMUST00000184114 107 ntBASIC15.67■□□□□ 0.1
Lima1Q9ERG0 AC153881.2-201ENSMUST00000214877 204 ntBASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Gm18115-201ENSMUST00000221209 621 ntBASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Gm10566-201ENSMUST00000086739 996 ntBASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Lima1Q9ERG0 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Rbfox2-206ENSMUST00000227314 1810 ntBASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Gm37736-201ENSMUST00000193564 2802 ntBASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lima1Q9ERG0 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms