Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Gm12895-201ENSMUST00000122214 226 ntBASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Gm27000-201ENSMUST00000182943 842 ntBASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Gm43514-201ENSMUST00000198852 424 ntBASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Gm43347-201ENSMUST00000200226 580 ntBASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Gm5864-201ENSMUST00000202263 970 ntBASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Smc1aQ9CU62 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC17.72■□□□□ 0.43
Smc1aQ9CU62 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Smc1aQ9CU62 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
Smc1aQ9CU62 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Smc1aQ9CU62 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Smc1aQ9CU62 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC17.72■□□□□ 0.43
Smc1aQ9CU62 Gm6443-201ENSMUST00000203599 874 ntBASIC17.72■□□□□ 0.43
Smc1aQ9CU62 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
Smc1aQ9CU62 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Smc1aQ9CU62 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Smc1aQ9CU62 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Smc1aQ9CU62 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Smc1aQ9CU62 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Smc1aQ9CU62 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Smc1aQ9CU62 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Smc1aQ9CU62 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Smc1aQ9CU62 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Smc1aQ9CU62 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Smc1aQ9CU62 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Smc1aQ9CU62 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Smc1aQ9CU62 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Smc1aQ9CU62 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Smc1aQ9CU62 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Smc1aQ9CU62 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Smc1aQ9CU62 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Smc1aQ9CU62 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Smc1aQ9CU62 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Smc1aQ9CU62 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Smc1aQ9CU62 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
Smc1aQ9CU62 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Smc1aQ9CU62 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Smc1aQ9CU62 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC17.71■□□□□ 0.43
Smc1aQ9CU62 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Smc1aQ9CU62 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Smc1aQ9CU62 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Smc1aQ9CU62 Gm43072-201ENSMUST00000200283 1671 ntBASIC17.71■□□□□ 0.42
Smc1aQ9CU62 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Smc1aQ9CU62 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Smc1aQ9CU62 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Smc1aQ9CU62 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Smc1aQ9CU62 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Smc1aQ9CU62 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC17.7■□□□□ 0.42
Smc1aQ9CU62 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Smc1aQ9CU62 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Smc1aQ9CU62 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
Smc1aQ9CU62 Gm13186-201ENSMUST00000118031 316 ntBASIC17.7■□□□□ 0.42
Smc1aQ9CU62 Gm13884-201ENSMUST00000118103 829 ntBASIC17.7■□□□□ 0.42
Smc1aQ9CU62 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC17.7■□□□□ 0.42
Smc1aQ9CU62 AC153889.1-201ENSMUST00000219257 330 ntBASIC17.7■□□□□ 0.42
Smc1aQ9CU62 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Smc1aQ9CU62 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Smc1aQ9CU62 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Smc1aQ9CU62 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC17.7■□□□□ 0.42
Smc1aQ9CU62 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Smc1aQ9CU62 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Smc1aQ9CU62 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Smc1aQ9CU62 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Smc1aQ9CU62 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Smc1aQ9CU62 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Smc1aQ9CU62 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Smc1aQ9CU62 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
Smc1aQ9CU62 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Smc1aQ9CU62 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Smc1aQ9CU62 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Smc1aQ9CU62 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Smc1aQ9CU62 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC17.69■□□□□ 0.42
Smc1aQ9CU62 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.42
Smc1aQ9CU62 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Smc1aQ9CU62 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Smc1aQ9CU62 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Smc1aQ9CU62 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC17.68■□□□□ 0.42
Smc1aQ9CU62 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Smc1aQ9CU62 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Smc1aQ9CU62 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Smc1aQ9CU62 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Smc1aQ9CU62 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC17.68■□□□□ 0.42
Smc1aQ9CU62 AC125350.1-201ENSMUST00000225115 903 ntBASIC17.68■□□□□ 0.42
Smc1aQ9CU62 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Smc1aQ9CU62 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Smc1aQ9CU62 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Smc1aQ9CU62 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms