Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Gm10013-201ENSMUST00000106074 672 ntBASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 AC125350.1-201ENSMUST00000225115 903 ntBASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 Gm9013-201ENSMUST00000132939 882 ntBASIC15.21■□□□□ 0.03
Lsm1Q8VC85 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lsm1Q8VC85 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.02
Lsm1Q8VC85 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Lsm1Q8VC85 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Lsm1Q8VC85 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Lsm1Q8VC85 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 AC114585.2-202ENSMUST00000228094 426 ntBASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lsm1Q8VC85 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Lsm1Q8VC85 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Lsm1Q8VC85 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Lsm1Q8VC85 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Lsm1Q8VC85 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Lsm1Q8VC85 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Lsm1Q8VC85 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Lsm1Q8VC85 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Lsm1Q8VC85 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Lsm1Q8VC85 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Lsm1Q8VC85 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Lsm1Q8VC85 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Lsm1Q8VC85 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Lsm1Q8VC85 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Lsm1Q8VC85 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Lsm1Q8VC85 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Lsm1Q8VC85 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Lsm1Q8VC85 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC15.19■□□□□ 0.02
Lsm1Q8VC85 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms