Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ddx55Q6ZPL9 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ddx55Q6ZPL9 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ddx55Q6ZPL9 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ddx55Q6ZPL9 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ddx55Q6ZPL9 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Ddx55Q6ZPL9 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ddx55Q6ZPL9 Fgf17-202ENSMUST00000227123 1336 ntBASIC17.98■□□□□ 0.47
Ddx55Q6ZPL9 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Gpr146-202ENSMUST00000053120 1040 ntBASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Gm29361-201ENSMUST00000183323 2000 ntBASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Ddx55Q6ZPL9 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Gm43125-201ENSMUST00000201724 730 ntBASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Wdyhv1-206ENSMUST00000227142 786 ntBASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Gm43338-201ENSMUST00000198617 2223 ntBASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
Ddx55Q6ZPL9 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.46
Ddx55Q6ZPL9 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
Ddx55Q6ZPL9 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 Gm44832-201ENSMUST00000208849 2303 ntBASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx55Q6ZPL9 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx55Q6ZPL9 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Ddx55Q6ZPL9 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx55Q6ZPL9 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx55Q6ZPL9 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx55Q6ZPL9 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx55Q6ZPL9 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx55Q6ZPL9 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx55Q6ZPL9 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC17.94■□□□□ 0.46
Ddx55Q6ZPL9 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC17.94■□□□□ 0.46
Ddx55Q6ZPL9 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC17.94■□□□□ 0.46
Ddx55Q6ZPL9 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC17.94■□□□□ 0.46
Ddx55Q6ZPL9 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC17.94■□□□□ 0.46
Ddx55Q6ZPL9 AC131187.1-201ENSMUST00000224567 809 ntBASIC17.94■□□□□ 0.46
Ddx55Q6ZPL9 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC17.94■□□□□ 0.46
Ddx55Q6ZPL9 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx55Q6ZPL9 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx55Q6ZPL9 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Ddx55Q6ZPL9 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx55Q6ZPL9 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ddx55Q6ZPL9 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ddx55Q6ZPL9 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms